PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG196000.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 281aa    MW: 30773 Da    PI: 8.3709
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG196000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.43.6e-3327554128
                  NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +ekewyfFs rd+ky+tg r+nrat+sgyWk+tgkdke+++  g lvg+kktLvfy+grapkgekt+Wvmheyrl
  Pavir.9NG196000.2.p   2 GEKEWYFFSMRDRKYPTGIRTNRATASGYWKTTGKDKEIFH-CGMLVGMKKTLVFYRGRAPKGEKTSWVMHEYRL 75 
                          578**************************************.99*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100541.31196IPR003441NAC domain
SuperFamilySSF1019412.09E-38296IPR003441NAC domain
PfamPF023651.2E-15675IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGEKEWYFFS MRDRKYPTGI RTNRATASGY WKTTGKDKEI FHCGMLVGMK KTLVFYRGRA  60
PKGEKTSWVM HEYRLQNKFP YKPNKEEWVV CRVFKKCQII KMRPPQGSPT MDDSPCHDAN  120
ASLGELGELD VSSILGGFTP SAAHTSSTSS PGALHQGAGE SFGHRVDMNA YMSWMAAANH  180
GAAAAAAAVM LPWATTPGLF GNVFAPNHQQ LALQKPLPFV AGCSQPRDLA GFAANVGSEH  240
DAMFASSLAK VEMECDQQQP APTPTPEQQL GMDESTWRAF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-3319668165NO APICAL MERISTEM PROTEIN
1ut4_B2e-3319668165NO APICAL MERISTEM PROTEIN
1ut7_A2e-3319668165NO APICAL MERISTEM PROTEIN
1ut7_B2e-3319668165NO APICAL MERISTEM PROTEIN
3swm_A3e-3319671168NAC domain-containing protein 19
3swm_B3e-3319671168NAC domain-containing protein 19
3swm_C3e-3319671168NAC domain-containing protein 19
3swm_D3e-3319671168NAC domain-containing protein 19
3swp_A3e-3319671168NAC domain-containing protein 19
3swp_B3e-3319671168NAC domain-containing protein 19
3swp_C3e-3319671168NAC domain-containing protein 19
3swp_D3e-3319671168NAC domain-containing protein 19
4dul_A2e-3319668165NAC domain-containing protein 19
4dul_B2e-3319668165NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.323230.0root
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00364DAPTransfer from AT3G18400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG196000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3631711e-133AK363171.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013D22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795943.11e-166protein CUP-SHAPED COTYLEDON 1-like
SwissprotQ9FK448e-47NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A3L6S6111e-170A0A3L6S611_PANMI; Protein CUP-SHAPED COTYLEDON 1-like
TrEMBLA0A3L6TJK61e-169A0A3L6TJK6_PANMI; Protein CUP-SHAPED COTYLEDON 1-like
STRINGPavir.Ia01262.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.13e-56NAC domain containing protein 58
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]