PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9NG196900.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Protein Properties

Length: 211aa MW: 23588.2 Da PI: 5.7675

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG196900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.9	4.4e-19	39	119	13	98
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + +++p +fa++++g s ++l+++ g++W +++ ++ ++++l++GWkeFv+a+ ++egD ++Fk++g s+f v +f+ Pavir.9NG196900.1.p 39 TETMSIPGRFANNFNGH--ISEVVSLKSPGGETWGIRV-GNNANDEVMLQSGWKEFVSAHSIEEGDYLLFKYSGVSSF--DVLMFD 119 4569*****888666..6779***********.4555556*************************99999..777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.1E-23	24	123	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.1E-23	26	126	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	14.833	27	121	IPR003340	B3 DNA binding domain
CDD	cd10017	1.52E-20	28	119	No hit	No description
SMART	SM01019	1.4E-10	30	121	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.0E-17	39	118	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MQNLDKNCRV CMEWQEHCYW SHMADDQKHF FKPMVGDFTE TMSIPGRFAN NFNGHISEVV 60 SLKSPGGETW GIRVGNNAND EVMLQSGWKE FVSAHSIEEG DYLLFKYSGV SSFDVLMFDS 120 SGCEKASPHF AQNHGSERIE GSAGVEGARR HGSHKSKGGK DCTPQLLPTD DDEDEDGDLE 180 LAVQRNTSRS IPKPCKRKLC RDIEQVHCRS *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.7446	0.0	callus

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG196900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797496.1	1e-123	B3 domain-containing protein Os03g0622200-like
Swissprot	Q10GM3	5e-77	Y3222_ORYSJ; B3 domain-containing protein Os03g0622200
TrEMBL	A0A2T7C3L6	1e-123	A0A2T7C3L6_9POAL; Uncharacterized protein
TrEMBL	A0A2T8I1F9	1e-124	A0A2T8I1F9_9POAL; Uncharacterized protein
STRING	Pavir.Ia01266.1.p	1e-130	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP562	34	179

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	7e-28	B3 family protein

Link Out ? help Back to Top
Phytozome	Pavir.9NG196900.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]