PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG197000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 329aa    MW: 37931.5 Da    PI: 10.0668
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG197000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.33.3e-19361161399
                          TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                          ++r+++p kf+++  gk +   t++le++ g s++v++   +++g++ l+ GW+ Fv++++L+ gDf+vFk+++rs    +v +f+ 
  Pavir.9NG197000.1.p  36 RQRMTIPQKFVQRLTGKIT--GTIKLESRAGSSFDVQV--INNQGKVSLGFGWEAFVSSHDLNRGDFLVFKYNRRSHL--KVLIFDP 116
                          679********99977744..48***************..99999***************************987766..9999885 PP
2B345.51.4e-14243327999
                          HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3   9 dvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                          +  + +++ +++++a+++       e+k+l+l+   g+ W+v++  +k ++++ l kGWk+F+++++L+ gD+++++l +++e +++v++
  Pavir.9NG197000.1.p 243 YGRS-RCMNFSRQYADAYlrF----EKKELMLQ-CGGKIWDVRC--SKVGKHTRLWKGWKQFASDKNLQLGDICLLELLRNKEYTMNVHI 324
                          4444.459999****999642....22367755.59********..99999999************************************ PP

                          E-S CS
                   B3  97 frk 99 
                          +r+
  Pavir.9NG197000.1.p 325 IRS 327
                          986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.61924117IPR003340B3 DNA binding domain
SuperFamilySSF1019361.06E-2025119IPR015300DNA-binding pseudobarrel domain
CDDcd100178.96E-1825115No hitNo description
SMARTSM010192.3E-1127117IPR003340B3 DNA binding domain
PfamPF023621.2E-1636115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-2137128IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.5E-21225327IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-20226326IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.8E-6233328IPR003340B3 DNA binding domain
PROSITE profilePS5086311.335234328IPR003340B3 DNA binding domain
CDDcd100171.04E-15236326No hitNo description
PfamPF023628.8E-13243327IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MSKKRESCKE RDVFFDWNGK IYQDKHFFRI MVGDFRQRMT IPQKFVQRLT GKITGTIKLE  60
SRAGSSFDVQ VINNQGKVSL GFGWEAFVSS HDLNRGDFLV FKYNRRSHLK VLIFDPSGCE  120
KLSSIVMDAT HKSQRKEPVG MPSPYHDISM KSSSSANKAW EQQDSSNQGH NVIDISSSSS  180
LPRSSEDATF PKDDQEVQFV PEYILPCGTY LTSMQKQKVK EKVRAIHSEI PIHVCVMTKS  240
NIYGRSRCMN FSRQYADAYL RFEKKELMLQ CGGKIWDVRC SKVGKHTRLW KGWKQFASDK  300
NLQLGDICLL ELLRNKEYTM NVHIIRSR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG197000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6TLE30.0A0A3L6TLE3_PANMI; Uncharacterized protein
STRINGPavir.Ia01267.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-19B3 family protein