PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG197300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 326aa    MW: 37499.3 Da    PI: 9.9911
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG197300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.66.3e-2027115198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ffkvl       + rl +p kf++++ gk    kt++le+++g +++v++  + + g++vl++GWk Fv a++Lk  Df+vFk++g+   
  Pavir.9NG197300.1.p  27 FFKVL---TGDFRERLGIPDKFVQHIRGK--IAKTVKLESRTGCTFDVEV--TESLGKVVLQTGWKAFVCAHDLKMWDFLVFKYNGSP-- 107
                          66666...3445668********888877..5679***************..*******************************98844.. PP

                          ..EEEEE- CS
                   B3  91 elvvkvfr 98 
                          +l+v +f+
  Pavir.9NG197300.1.p 108 RLKVLIFD 115
                          45888887 PP
2B349.86.2e-16233322897
                          -HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                   B3   8 sdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                          s  +k +++ +++k+a+ +   ++      +  l + +g+sWev+++++k+++      l kGWk+F+++n+L++gD ++F+l +++e +
  Pavir.9NG197300.1.p 233 SIEGKPQIMDISRKYADVYlpfDH------QTLLLQHRGKSWEVRCQIQKSKSNlrsKRLLKGWKQFARDNNLQVGDLCLFELLEDREYT 316
                          556677889999999988864332......2456677*********9966665544566779********************99999999 PP

                          .EEEEE CS
                   B3  92 lvvkvf 97 
                          ++v ++
  Pavir.9NG197300.1.p 317 MNVDII 322
                          999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-2221119IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.74424117IPR003340B3 DNA binding domain
CDDcd100179.33E-2225115No hitNo description
SuperFamilySSF1019361.24E-2125124IPR015300DNA-binding pseudobarrel domain
PfamPF023627.4E-1727115IPR003340B3 DNA binding domain
SMARTSM010192.2E-927117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-20218324IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-18220320IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.534226325IPR003340B3 DNA binding domain
CDDcd100171.92E-15228322No hitNo description
SMARTSM010195.6E-8229325IPR003340B3 DNA binding domain
PfamPF023621.0E-13236322IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MRKPGKRCKE TDAHYYWNSS DVRDRYFFKV LTGDFRERLG IPDKFVQHIR GKIAKTVKLE  60
SRTGCTFDVE VTESLGKVVL QTGWKAFVCA HDLKMWDFLV FKYNGSPRLK VLIFDLSCCE  120
KVPPCHTRDR GKGEEQIENS RSCDDFPMKS PGSKRKAWKQ REGSMNVNTS STSLSDSSGG  180
SMSSEHQKSH SVPSYILPQR TYLTCVQKKK LKEKVQAICS KTPIYGCVMK KTSIEGKPQI  240
MDISRKYADV YLPFDHQTLL LQHRGKSWEV RCQIQKSKSN LRSKRLLKGW KQFARDNNLQ  300
VGDLCLFELL EDREYTMNVD IIGPK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG197300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796557.10.0putative B3 domain-containing protein Os03g0621600 isoform X1
SwissprotQ851V54e-97Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLA0A2S3IK340.0A0A2S3IK34_9POAL; Uncharacterized protein
STRINGPavir.Ia01270.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-20B3 family protein