PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG197300.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 232aa    MW: 26576.6 Da    PI: 9.8758
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG197300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.83.1e-16139228897
                          -HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                   B3   8 sdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                          s  +k +++ +++k+a+ +   ++      +  l + +g+sWev+++++k+++      l kGWk+F+++n+L++gD ++F+l +++e +
  Pavir.9NG197300.2.p 139 SIEGKPQIMDISRKYADVYlpfDH------QTLLLQHRGKSWEVRCQIQKSKSNlrsKRLLKGWKQFARDNNLQVGDLCLFELLEDREYT 222
                          556677889999999988864332......2456677*********9966665544566779********************99999999 PP

                          .EEEEE CS
                   B3  92 lvvkvf 97 
                          ++v ++
  Pavir.9NG197300.2.p 223 MNVDII 228
                          999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.8E-4333IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.6E-21124230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.23E-18126226IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.534132231IPR003340B3 DNA binding domain
CDDcd100171.50E-16134228No hitNo description
SMARTSM010195.6E-8135231IPR003340B3 DNA binding domain
PfamPF023625.1E-14141228IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MWDFLVFKYN GSPRLKVLIF DLSCCEKVPP CHTRDRGKGE EQIENSRSCD DFPMKSPGSK  60
RKAWKQREGS MNVNTSSTSL SDSSGGSMSS EHQKSHSVPS YILPQRTYLT CVQKKKLKEK  120
VQAICSKTPI YGCVMKKTSI EGKPQIMDIS RKYADVYLPF DHQTLLLQHR GKSWEVRCQI  180
QKSKSNLRSK RLLKGWKQFA RDNNLQVGDL CLFELLEDRE YTMNVDIIGP K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG197300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796558.11e-127putative B3 domain-containing protein Os03g0621600 isoform X2
TrEMBLA0A2T7C3N11e-126A0A2T7C3N1_9POAL; Uncharacterized protein
TrEMBLA0A2T7C3P01e-127A0A2T7C3P0_9POAL; Uncharacterized protein
TrEMBLA0A2T7C3P21e-126A0A2T7C3P2_9POAL; Uncharacterized protein
STRINGPavir.Ia01270.1.p1e-171(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.11e-09related to vernalization1 1