PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG197300.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 292aa    MW: 33217.5 Da    PI: 9.9027
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG197300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.32.8e-187811898
                         --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                         +p kf++++ gk    kt++le+++g +++v++  + + g++vl++GWk Fv a++Lk  Df+vFk++g+   +l+v +f+
  Pavir.9NG197300.3.p  7 IPDKFVQHIRGK--IAKTVKLESRTGCTFDVEV--TESLGKVVLQTGWKAFVCAHDLKMWDFLVFKYNGSP--RLKVLIFD 81
                         9*****888877..5679***************..*******************************98844..45888887 PP
2B350.15e-16199288897
                          -HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                   B3   8 sdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                          s  +k +++ +++k+a+ +   ++      +  l + +g+sWev+++++k+++      l kGWk+F+++n+L++gD ++F+l +++e +
  Pavir.9NG197300.3.p 199 SIEGKPQIMDISRKYADVYlpfDH------QTLLLQHRGKSWEVRCQIQKSKSNlrsKRLLKGWKQFARDNNLQVGDLCLFELLEDREYT 282
                          556677889999999988864332......2456677*********9966665544566779********************99999999 PP

                          .EEEEE CS
                   B3  92 lvvkvf 97 
                          ++v ++
  Pavir.9NG197300.3.p 283 MNVDII 288
                          999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.012183IPR003340B3 DNA binding domain
SMARTSM010190.0058283IPR003340B3 DNA binding domain
SuperFamilySSF1019361.83E-17690IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.6E-18685IPR015300DNA-binding pseudobarrel domain
PfamPF023622.5E-15781IPR003340B3 DNA binding domain
CDDcd100172.49E-17781No hitNo description
Gene3DG3DSA:2.40.330.109.5E-21184290IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-18186286IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.534192291IPR003340B3 DNA binding domain
CDDcd100174.25E-16194288No hitNo description
SMARTSM010195.6E-8195291IPR003340B3 DNA binding domain
PfamPF023628.2E-14202288IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MSLLQGIPDK FVQHIRGKIA KTVKLESRTG CTFDVEVTES LGKVVLQTGW KAFVCAHDLK  60
MWDFLVFKYN GSPRLKVLIF DLSCCEKVPP CHTRDRGKGE EQIENSRSCD DFPMKSPGSK  120
RKAWKQREGS MNVNTSSTSL SDSSGGSMSS EHQKSHSVPS YILPQRTYLT CVQKKKLKEK  180
VQAICSKTPI YGCVMKKTSI EGKPQIMDIS RKYADVYLPF DHQTLLLQHR GKSWEVRCQI  240
QKSKSNLRSK RLLKGWKQFA RDNNLQVGDL CLFELLEDRE YTMNVDIIGP K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG197300.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796558.11e-168putative B3 domain-containing protein Os03g0621600 isoform X2
SwissprotQ851V57e-82Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLA0A2T7C3P21e-169A0A2T7C3P2_9POAL; Uncharacterized protein
STRINGPavir.Ia01270.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-17B3 family protein