PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG197500.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 291aa    MW: 33181.2 Da    PI: 9.6914
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG197500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.92.2e-1929116298
                          EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                          fkvl     + ++rlvlp k a +  gk ++   ++le++sg +++v++   k+sgr+vl++GW+ F +a+gLk  Df+vFk+dg  +  
  Pavir.9NG197500.2.p  29 FKVL--IGDF-RKRLVLPDKLALHLRGKIAR--SIKLESRSGHTFDVQV--AKNSGRVVLQSGWELFISAHGLKKLDFLVFKYDGICR-- 109
                          5555..4444.457********888777555..5***************..*******************************998443.. PP

                          .EEEEE- CS
                   B3  92 lvvkvfr 98 
                          ++v +f+
  Pavir.9NG197500.2.p 110 MKVLIFD 116
                          5888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-2021120IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-2023125IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.01225118IPR003340B3 DNA binding domain
CDDcd100171.55E-1826116No hitNo description
SMARTSM010191.5E-828118IPR003340B3 DNA binding domain
PfamPF023625.9E-1728116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.5E-10206288IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-10208288IPR015300DNA-binding pseudobarrel domain
CDDcd100171.04E-7211288No hitNo description
PROSITE profilePS508638.036214290IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGKPRKGWRE KDASDHWNNQ TDDQCKRFFK VLIGDFRKRL VLPDKLALHL RGKIARSIKL  60
ESRSGHTFDV QVAKNSGRVV LQSGWELFIS AHGLKKLDFL VFKYDGICRM KVLIFDPSGC  120
EKVPPCFFTK NAINGRQRKE ESFDISSNYA KVANISSSSC SPSESSGGST SSEEHEAHSV  180
PSYILPRGTS LTNVQNKKLE EKVQAICSEI PIYVCVMKKT NISGEHQHMR FSGEYSEAYL  240
LFREKMLMLH CHGKSWEVMC RSQVPSGQCK FQKLCKGWKR FACDNNLQWW *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG197500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679254.11e-138putative B3 domain-containing protein Os03g0621600 isoform X2
TrEMBLA0A2T7C3N71e-165A0A2T7C3N7_9POAL; Uncharacterized protein
STRINGPavir.Ia01200.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-16B3 family protein