PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG197500.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 205aa    MW: 23061.5 Da    PI: 8.4848
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG197500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.31.9e-151202021698
                          EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-...TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt...kGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          ++++ ++ e++ +      ++ + + +g+sWev ++ +  sg++ ++   kGWk+F+ +n+L++gD ++F+l ++++ +++v+++r
  Pavir.9NG197500.3.p 120 MRFSGEYSEAYLLFR---EKMLMLHCHGKSWEVMCRSQVPSGQCKFQklcKGWKRFACDNNLQVGDLCLFELLETKKYTMNVHIVR 202
                          556666666663332...25889999*********996666664444444**********************999********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-1897202IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-1899202IPR015300DNA-binding pseudobarrel domain
CDDcd100172.23E-15102202No hitNo description
PROSITE profilePS5086311.35105204IPR003340B3 DNA binding domain
SMARTSM010192.2E-6108204IPR003340B3 DNA binding domain
PfamPF023624.6E-14114203IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MKVLIFDPSG CEKVPPCFFT KNAINGRQRK EESFDISSNY AKVANISSSS CSPSESSGGS  60
TSSEEHEAHS VPSYILPRGT SLTNVQNKKL EEKVQAICSE IPIYVCVMKK TNISGEHQHM  120
RFSGEYSEAY LLFREKMLML HCHGKSWEVM CRSQVPSGQC KFQKLCKGWK RFACDNNLQV  180
GDLCLFELLE TKKYTMNVHI VRGK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG197500.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791592.15e-97putative B3 domain-containing protein Os03g0621600
TrEMBLA0A270R5N21e-104A0A270R5N2_9POAL; Uncharacterized protein (Fragment)
STRINGPavir.Ia01200.1.p1e-130(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.12e-09related to vernalization1 1