PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG197600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 175aa    MW: 20016.2 Da    PI: 10.3753
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG197600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.96.5e-17921741499
                          T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                   B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                          + l l +k+a ++   ++e++ l+l +++g++W+v l+ ++k++++ +++GWk+ v++n+L+ gD+++F+l ++ +  +++++++rk
  Pavir.9NG197600.1.p  92 CYLGLCRKYAHQYL--PREGQILRL-QQHGKVWQVLLC-TNKRNSIRFSRGWKKIVSENKLQIGDICLFELLRNeKVLTMNIHIIRK 174
                          78899999996663..456656665.56*********5.888889*************************99998999999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-2273173IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-2073173IPR015300DNA-binding pseudobarrel domain
CDDcd100174.98E-1976170No hitNo description
SMARTSM010195.4E-577171IPR003340B3 DNA binding domain
PROSITE profilePS5086311.7379174IPR003340B3 DNA binding domain
PfamPF023621.9E-1592174IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MQSSGSKYPT PAEKKGPNQG TKKTNTSSST CHLNAPESDQ EIYSTASYIF PPSTHLTQMQ  60
RMKVERRVQD ICSSIPIFGS VMTKCNITRN PCYLGLCRKY AHQYLPREGQ ILRLQQHGKV  120
WQVLLCTNKR NSIRFSRGWK KIVSENKLQI GDICLFELLR NEKVLTMNIH IIRK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG197600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796319.11e-101putative B3 domain-containing protein Os03g0621600 isoform X2
TrEMBLA0A2S3IK501e-102A0A2S3IK50_9POAL; Uncharacterized protein
STRINGPavir.Ia01271.1.p1e-124(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-14B3 family protein