PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG202200.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 154aa    MW: 16912.3 Da    PI: 10.386
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG202200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.83.1e-183064135
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C+ C+ttkTplWR gp g+ +LCnaCG++yrkk++
  Pavir.9NG202200.2.p 30 CTECHTTKTPLWRGGPCGPMSLCNACGIRYRKKRR 64
                         ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.18E-142263No hitNo description
SMARTSM004016.3E-152476IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.4792460IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.9E-142864IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.27E-142964No hitNo description
PfamPF003205.3E-163064IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403055IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MAPVMDSSVE KGSGSADPDE RPAAGEPKAC TECHTTKTPL WRGGPCGPMS LCNACGIRYR  60
KKRREALGLD ANKSGAAEQQ HQQRKKKATA TASKREREKE AETDEVTVEL RTVGFGKEVV  120
LKQRRRMRRR RRLGEEERAA ILLMALSSGV VYA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122128QRRRMRR
2124129RRMRRR
3124131RRMRRRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.57380.0callus| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG202200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1000031e-68FP100003.1 Phyllostachys edulis cDNA clone: bphyst005b14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794900.12e-72GATA transcription factor 16-like isoform X2
TrEMBLA0A1E5US094e-74A0A1E5US09_9POAL; Uncharacterized protein
STRINGPavir.J03766.1.p7e-93(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.13e-20GATA transcription factor 16