PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9NG205300.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Protein Properties

Length: 171aa MW: 19306.2 Da PI: 7.5013

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG205300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.1	1.1e-15	34	117	9	98
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++ ++ +++p + ++ + g+ s + +e+++g+++ vk+ k++g++vl+ GW+ F +a+++ke+D+++F+++++s+f +v +++ Pavir.9NG205300.1.p 34 SANYRRSMTIPDRVMNLFRGE--LSESIEIESPDGNVYGVKV--IKHKGKIVLQCGWEVFIDAHHIKENDSLLFQHIENSRF--KVLILD 117 44555679****9777666..6678***********..9******************************99999..777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.14E-20	22	121	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	4.8E-19	25	121	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.646	26	119	IPR003340	B3 DNA binding domain
SMART	SM01019	4.2E-9	28	119	IPR003340	B3 DNA binding domain
CDD	cd10017	2.60E-15	30	117	No hit	No description
Pfam	PF02362	3.5E-14	33	117	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MSGHSSQMKK SCVCCQRYMD HLDGKMKCFL SHMSANYRRS MTIPDRVMNL FRGELSESIE 60 IESPDGNVYG VKVIKHKGKI VLQCGWEVFI DAHHIKENDS LLFQHIENSR FKVLILDSDG 120 CEKVFSCSGI KITTNAQERE AEYVDISDTA HDYTKKLSGT KDQPVVKGLL *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG205300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025791593.1	1e-102	B3 domain-containing protein Os03g0620400-like
Swissprot	Q851W5	5e-67	Y3204_ORYSJ; B3 domain-containing protein Os03g0620400
TrEMBL	A0A2T7C3P1	1e-105	A0A2T7C3P1_9POAL; Uncharacterized protein
STRING	Pavir.Ia01274.1.p	1e-119	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP585	31	172

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18960.1	4e-12	B3 family protein

Link Out ? help Back to Top
Phytozome	Pavir.9NG205300.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]