PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG205400.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 448aa    MW: 49962.7 Da    PI: 10.0062
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG205400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.42.9e-141692501597
                          -EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3  15 rlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                           lv++k++a e+  +  + + +tle +   ++W  +l +r ++ +y+l + Wk+Fv++n+Lk++D+++F+ ++ ++f+  v+++
  Pavir.9NG205400.2.p 169 ALVISKSYAVEYFPQ--RAQIITLERPGCkKKWHPRLHIRPNRVGYILCGHWKNFVRDNKLKTNDICIFQPIKGKRFRVIVHLL 250
                          59**********755..55589999966569******99999999*************************99989999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.7E-19145247IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-20148250IPR015300DNA-binding pseudobarrel domain
CDDcd100178.21E-18152248No hitNo description
SMARTSM010196.2E-7154253IPR003340B3 DNA binding domain
PROSITE profilePS5086310.616155253IPR003340B3 DNA binding domain
PfamPF023623.6E-13168250IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-9341444IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-8343444IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.056349444IPR003340B3 DNA binding domain
PROSITE profilePS508636.964391444IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MAGRGCPNNK SCHCYKSCVD HADGTMKCLL SHANSNRKHG MTIIQIFGSC CCNKDSSCAS  60
TKNGLMVREG SANSIDTSRG SSDHATQSST NETHESLSSS EESDSQSESQ PSQLGHCNTF  120
SKLWFIPNKR DLNPEQGKKI DDLVKKIQPQ FPVLVVRMKK SSAKPGNPAL VISKSYAVEY  180
FPQRAQIITL ERPGCKKKWH PRLHIRPNRV GYILCGHWKN FVRDNKLKTN DICIFQPIKG  240
KRFRVIVHLL GEASTHSRAR RPRDSNNGSA RKQSSAALVH ENSSSRDKSP QLNLRLRHRV  300
AKETCASDDP GEPSRPPAFV VLRHTSLTPA QEKTVGEKVK AIQSDVPVFV ANVSEEIVGD  360
NGTFSLDFAS RYATPHLPDG KQTPTLSQDG WRKAWRTKML NGRMLPGELR EFATDNRMRT  420
GDLCLFEPMK EERLAMAVHI IRSEQYS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG205400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797721.10.0B3 domain-containing protein Os03g0619800-like
TrEMBLA0A2T7C3P50.0A0A2T7C3P5_9POAL; Uncharacterized protein
STRINGPavir.Ia01275.1.p0.0(Panicum virgatum)