PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9NG206200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Protein Properties

Length: 190aa MW: 21653.1 Da PI: 10.191

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG206200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	32.8	1.2e-10	59	124	18	84
--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 18 lpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 ++k++a h +++s+ +tl+++s +W k+ r+ s++ +l + W +Fv++n+++egD++++ Pavir.9NG206200.1.p 59 ISKDYAFPHF--PHRSTNVTLQTPSKrSEWHPKFYKRNASRKNMLMGQWLDFVRDNRVQEGDICLLFP 124 6666665554..568899***777488*77999999********************8763 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	9.4E-16	33	140	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.51E-16	34	140	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.0064	41	141	IPR003340	B3 DNA binding domain
CDD	cd10017	8.11E-15	41	136	No hit	No description
PROSITE profile	PS50863	10.052	42	141	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.4E-8	59	133	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MIFRHPQKAD YVLSYRSILS EAQKERVIAF IQEIQPKITV FVAVMQKRNI QPPGPFLGIS 60 KDYAFPHFPH RSTNVTLQTP SKRSEWHPKF YKRNASRKNM LMGQWLDFVR DNRVQEGDIC 120 LLFPAEGGKR YTYTVYLLCA SATHSIGRAG FQIVCPCPGR SSAKMASEVH IMEEPTNGIR 180 NIFTNLVGF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG206200.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797620.1	1e-115	B3 domain-containing protein Os03g0619800-like isoform X3
Refseq	XP_025797621.1	1e-115	B3 domain-containing protein Os03g0619600-like isoform X4
Swissprot	Q6AV21	3e-56	Y3982_ORYSJ; B3 domain-containing protein Os03g0619800
TrEMBL	A0A2T7C3Q0	1e-116	A0A2T7C3Q0_9POAL; Uncharacterized protein
TrEMBL	A0A2T7C3Q4	1e-116	A0A2T7C3Q4_9POAL; Uncharacterized protein
STRING	Pavir.Ia01277.1.p	1e-127	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP585	31	172

Link Out ? help Back to Top
Phytozome	Pavir.9NG206200.1.p