PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG209500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family LBD
Protein Properties Length: 234aa    MW: 23960.1 Da    PI: 7.0781
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG209500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.31.1e-282105199
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C++ Cvl+p +     ++ q++++ +v+k+FG++ ++  l+a+p ++r+++++sl+yeA+ r+  Pv+G +g+++++++
  Pavir.9NG209500.1.p   2 SCNGCRVLRKGCSDACVLRPSIewidgAQPQANATVFVAKFFGRAGLVASLAAVPLHHRPALFRSLLYEACGRIISPVSGGIGLMWTGNW 91 
                          6*********************9999888899********************************************************** PP

               DUF260  86 qleqlkaelallke 99 
                          +l+q++a+++l++e
  Pavir.9NG209500.1.p  92 DLCQAAADAVLRGE 105
                          *******9998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.2671107IPR004883Lateral organ boundaries, LOB
PfamPF031959.3E-232100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDACVLR PSIEWIDGAQ PQANATVFVA KFFGRAGLVA SLAAVPLHHR  60
PALFRSLLYE ACGRIISPVS GGIGLMWTGN WDLCQAAADA VLRGESLRAL SAIPAAFTDR  120
DMDGLYGSAG VAASSSSPEN SSSAPPSRKR RNTNGGLAFN AAAAVPACQN PPAGLLQSCE  180
LDLCLTPASP MAGSGRRGCG GASDEYSATT TCEDLQAAGD VEARAPALLN LFN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG209500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2880021e-142AK288002.1 Oryza sativa Japonica Group cDNA, clone: J075110B01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982442.11e-129LOB domain-containing protein 37
TrEMBLA0A3L6TGQ71e-139A0A3L6TGQ7_PANMI; LOB domain-containing protein 37-like
STRINGPavir.J16587.1.p1e-132(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84503041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.18e-54LOB domain-containing protein 37