PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG210900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 418aa    MW: 46184.2 Da    PI: 9.6302
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG210900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.6e-16110153347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT e+d++l ++ +++G++ W+ Iar+++ gRt+kqc++rw + 
  Pavir.9NG210900.1.p 110 KWTYEDDKKLRELMERHGNKAWSIIAREFP-GRTGKQCRERWINN 153
                          8*****************************.***********986 PP
2Myb_DNA-binding44.92.6e-14162202345
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          +WT+ E +llv+++k+lG++ W++ ar+++ gR+++++k+ w+
  Pavir.9NG210900.1.p 162 AWTETELLLLVECHKKLGKK-WSKMARRIP-GRSENSIKNQWY 202
                          8*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.221103158IPR017930Myb domain
SMARTSM007174.8E-14107156IPR001005SANT/Myb domain
SuperFamilySSF466891.95E-26109204IPR009057Homeodomain-like
CDDcd001673.27E-14110154No hitNo description
Gene3DG3DSA:1.10.10.608.5E-23110158IPR009057Homeodomain-like
PfamPF139211.0E-17111167No hitNo description
PROSITE profilePS5129412.168159209IPR017930Myb domain
SMARTSM007176.6E-12159207IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-16159203IPR009057Homeodomain-like
CDDcd001671.35E-10162202No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MAVHLGEKRS MFHKMFEKRY KYALGQQDVG TMHGVLAHEA VGQATNFGVS DYGTHWQGAS  60
GFIGRGGDPI QEAPIGEYHG QMIGSMALQN EAGKAYAEAS FVVNNATGRK WTYEDDKKLR  120
ELMERHGNKA WSIIAREFPG RTGKQCRERW INNLDPKIKT TAWTETELLL LVECHKKLGK  180
KWSKMARRIP GRSENSIKNQ WYAAERSLKA KRKNRKGDAR PGIIEDYMRS LKGKGKNKVK  240
KVTMPFPGSN FAASPQVLES GDKPLPPPSL SAPFLGLNIN VGDHFALEAM YDDPVFTGKH  300
QPFAYPQDQE SGYLSSPYEL APGNPFAEDR QAGGYYNQLQ FHQLPTSVQQ EQAFSNYRVA  360
EDTNQVFAGR YYREAMAAAA AATTPAGSAD IVAKRLAMLA IADEGPSLNS PPAGGCF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-301112067102C-Myb DNA-Binding Domain
1msf_C3e-301112067102C-Myb DNA-Binding Domain
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG210900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012704394.11e-137transcription factor MYB62-like
TrEMBLA0A3L6THU60.0A0A3L6THU6_PANMI; Uncharacterized protein
STRINGPavir.Ia01307.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3220534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.18e-33myb domain protein 98