PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9NG212400.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 310aa MW: 34732.7 Da PI: 9.1284

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG212400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00035	10	30	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C+ksF++ +L H+++H Pavir.9NG212400.1.p 10 CKVCKKSFPSYNSLGGHMNLH 30 *******************99 PP
2	zf-C2H2	12.9	0.00034	84	105	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C ++F + + L +H+r H Pavir.9NG212400.1.p 84 ECQLCFRVFASCHALSVHMRAH 105 5*******************99 PP
3	zf-C2H2	16.9	1.8e-05	215	237	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk+F+++ L +H + H Pavir.9NG212400.1.p 215 HDCKLCGKVFTSSKGLASHKKFH 237 56******************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.74E-7	6	30	No hit	No description
PROSITE profile	PS50157	9.785	8	35	IPR007087	Zinc finger, C2H2
SMART	SM00355	1.7	8	30	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	9.2E-9	8	31	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	10	30	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	7.74E-7	78	105	No hit	No description
PROSITE profile	PS50157	9.536	83	110	IPR007087	Zinc finger, C2H2
SMART	SM00355	4.2	83	105	IPR015880	Zinc finger, C2H2-like
Pfam	PF13894	5.4E-4	84	105	No hit	No description
PROSITE pattern	PS00028	0	85	105	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	8.59E-5	214	238	No hit	No description
SMART	SM00355	0.033	215	237	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.845	215	237	IPR007087	Zinc finger, C2H2
Pfam	PF13912	0.0053	215	237	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	5.6E-4	215	237	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	217	237	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MPPRGRKHWC KVCKKSFPSY NSLGGHMNLH RVKRKQKNQA RSTLSLPNIG DGPGGYGLRE 60 RRHSTWLLCD SSDDEYLTMV PKNECQLCFR VFASCHALSV HMRAHARHER KMVAKDVVVS 120 TPVMLTYGME EVNAARVLLM ISGYSGMDSA SEHCDEDYEM GGNSAYCVQK SEMELDYSCH 180 GKTGDAELMM PESPSSDVKP KFISLSQVLK VTESHDCKLC GKVFTSSKGL ASHKKFHKVP 240 DHEKVAASPN SEISQTGQQL LEVDSRLLRL NLNLPGFSDR NYRSRSAKSA QTPWWTTRAF 300 RSERMLGVV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG212400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796823.1	0.0	uncharacterized protein LOC112876858
Refseq	XP_025796824.1	0.0	uncharacterized protein LOC112876858
TrEMBL	A0A2S3IK94	0.0	A0A2S3IK94_9POAL; Uncharacterized protein
STRING	Pavir.J08570.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14367	19	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G29340.1	4e-08	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Pavir.9NG212400.1.p