PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9NG215700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRAS

Protein Properties

Length: 716aa MW: 80795.3 Da PI: 7.5201

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG215700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	346.4	4.5e-106	337	707	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 l++lL++cA+avs ++++la+ +L+ ++++as +gd qRla++++ L+ rla+++s+ly++l +++ + ++ l++++l ++P+ Pavir.9NG215700.1.p 337 LRTLLIHCAQAVSVNNHTLASDILSIIRQHASTSGDDSQRLAFCLADCLEVRLAGTGSQLYHKLMAKRRN---AVDILKVFNLSIAICPF 423 6789********************************************************99999988...9************ PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 l+ + N++I + +g+ +vHiiDf+i G+QWp+L+++La+R++gpp++RiTg+++p++g +e+ ++ g+rLa++A+ ++++fe+ Pavir.9NG215700.1.p 424 LRAPYYFSNKTIIDVSKGKPQVHIIDFGICFGFQWPSLFEQLAKREGGPPKVRITGIEQPQPGfrPNESSRNAGQRLADYASMFNISFEY 513 ************************************************************9********************* PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268 + +++++e++++++++++++++l+Vn++++l++l de+vs++s+r++vL+++++++Pkv+++ + +++++ Fl+rf e +++ysalf Pavir.9NG215700.1.p 514 QG-ISSKWETIKIDDFNIEKDDVLIVNCIYRLKNLADETVSINSARNRVLNTIRTMKPKVFIHGVVNGSYSTPFFLTRFKEVMYHYSALF 602 .7************************************************************************************ PP GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358 d ++++lpr++e+r+ +Er + + + nv+aceg+er+er e+++kW+ r ++aGF+++pl+ +++k +++++++++d + +e++++l Pavir.9NG215700.1.p 603 DIIDKTLPRDDEARMILERDIYLPVVLNVIACEGSERIERPESYKKWKLRNKKAGFEQLPLNPDTVKGTRAMVKQYHKD-FVTNEDDQWL 691 *************************************************************************77.****** PP GRAS 359 vlgWkdrpLvsvSaWr 374 +lgWk+r L+ + W+ Pavir.9NG215700.1.p 692 LLGWKGRILYGIATWK 707 *************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.597	311	688	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.6E-103	337	707	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 716 aa Download sequence Send to blast
MANTPGCYAS SLKFMDPTNK YNDLDLLFHP TSSIDHFPPA ATTVNNDGYV ASSASSSSKI 60 HAPQSCEVSS NMTPDWYGTN VAEYSEESWI NSDITLKYIN KLLMQEDSDE KSKSHHGESA 120 LRAMEEPLYR LVGQNYPANT QLLPVCSCDH PNTLDGSISK FNGPSCSNCP AAISSGNNHY 180 NHNLQAFEAP WRLSDIVGET RQFTQDTYTT ELGLNVGGLA IVENNSRYNQ SLQFNVGVSR 240 KHAEAQCRKM NSHKEDLDLL EGRSNKQFAT SFNEPTRDEI FDKVLLCFEH EPVDQGIVLQ 300 KAMSSRSTIN SQTDQGRTSA QRNKKGKKQQ RKEMMDLRTL LIHCAQAVSV NNHTLASDIL 360 SIIRQHASTS GDDSQRLAFC LADCLEVRLA GTGSQLYHKL MAKRRNAVDI LKVFNLSIAI 420 CPFLRAPYYF SNKTIIDVSK GKPQVHIIDF GICFGFQWPS LFEQLAKREG GPPKVRITGI 480 EQPQPGFRPN ESSRNAGQRL ADYASMFNIS FEYQGISSKW ETIKIDDFNI EKDDVLIVNC 540 IYRLKNLADE TVSINSARNR VLNTIRTMKP KVFIHGVVNG SYSTPFFLTR FKEVMYHYSA 600 LFDIIDKTLP RDDEARMILE RDIYLPVVLN VIACEGSERI ERPESYKKWK LRNKKAGFEQ 660 LPLNPDTVKG TRAMVKQYHK DFVTNEDDQW LLLGWKGRIL YGIATWKPCE SNNGD*

Sequence ? help Back to Top

Protein Sequence Length: 716 aa Download sequence Send to blast

MANTPGCYAS SLKFMDPTNK YNDLDLLFHP TSSIDHFPPA ATTVNNDGYV ASSASSSSKI  60
HAPQSCEVSS NMTPDWYGTN VAEYSEESWI NSDITLKYIN KLLMQEDSDE KSKSHHGESA  120
LRAMEEPLYR LVGQNYPANT QLLPVCSCDH PNTLDGSISK FNGPSCSNCP AAISSGNNHY  180
NHNLQAFEAP WRLSDIVGET RQFTQDTYTT ELGLNVGGLA IVENNSRYNQ SLQFNVGVSR  240
KHAEAQCRKM NSHKEDLDLL EGRSNKQFAT SFNEPTRDEI FDKVLLCFEH EPVDQGIVLQ  300
KAMSSRSTIN SQTDQGRTSA QRNKKGKKQQ RKEMMDLRTL LIHCAQAVSV NNHTLASDIL  360
SIIRQHASTS GDDSQRLAFC LADCLEVRLA GTGSQLYHKL MAKRRNAVDI LKVFNLSIAI  420
CPFLRAPYYF SNKTIIDVSK GKPQVHIIDF GICFGFQWPS LFEQLAKREG GPPKVRITGI  480
EQPQPGFRPN ESSRNAGQRL ADYASMFNIS FEYQGISSKW ETIKIDDFNI EKDDVLIVNC  540
IYRLKNLADE TVSINSARNR VLNTIRTMKP KVFIHGVVNG SYSTPFFLTR FKEVMYHYSA  600
LFDIIDKTLP RDDEARMILE RDIYLPVVLN VIACEGSERI ERPESYKKWK LRNKKAGFEQ  660
LPLNPDTVKG TRAMVKQYHK DFVTNEDDQW LLLGWKGRIL YGIATWKPCE SNNGD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-44	341	707	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG215700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797095.1	0.0	scarecrow-like protein 9 isoform X1
TrEMBL	A0A2S3IKC1	0.0	A0A2S3IKC1_9POAL; Uncharacterized protein
STRING	Pavir.Ia01446.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11788	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-146	GRAS family protein

Link Out ? help Back to Top
Phytozome	Pavir.9NG215700.1.p