PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG255100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 252aa    MW: 27469.5 Da    PI: 8.6329
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG255100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.58.5e-15452148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W++eEd l+++ ++++G g +W + ++t+g++R++ +c+srw++yl
  Pavir.9NG255100.1.p  4 KGKWSKEEDALIKNHIEKYGVGrSWQALSNTLGLRRCGRSCRSRWLNYL 52
                         79******************999************************97 PP
2Myb_DNA-binding36.61.1e-1159101246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g++T+ E+ ++ d   ++G+  W+ Ia+ ++ gRt+  +k++w++
  Pavir.9NG255100.1.p  59 GNFTPAEERIICDMYSKMGSC-WSVIAAQLP-GRTDLAIKNYWNS 101
                          89*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.318156IPR017930Myb domain
SMARTSM007177.1E-11354IPR001005SANT/Myb domain
SuperFamilySSF466892.54E-25399IPR009057Homeodomain-like
PfamPF002496.9E-13452IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-19559IPR009057Homeodomain-like
PROSITE profilePS5129415.01957107IPR017930Myb domain
SMARTSM007171.3E-1157105IPR001005SANT/Myb domain
PfamPF002493.5E-1059101IPR001005SANT/Myb domain
CDDcd001671.23E-860103No hitNo description
Gene3DG3DSA:1.10.10.602.8E-2160106IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MMKKGKWSKE EDALIKNHIE KYGVGRSWQA LSNTLGLRRC GRSCRSRWLN YLRSGLKHGN  60
FTPAEERIIC DMYSKMGSCW SVIAAQLPGR TDLAIKNYWN SSLKKKFPAA RTSAAAAYRC  120
RNRPACSTSS DAGTPARDLQ LVSYSSEDST AGPSPAKPVL TGLTPVQAVQ PPVPVVAAQP  180
IPAVPVSGPV KIEQTPPPPP PRACDQTGES VMDIVCAPMS PVPLSIMEPD ELACIYQFDD  240
IDSFLPWFDH H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-23210725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG255100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661280.11e-132transcription factor RAX2
TrEMBLA0A2S3ILL51e-141A0A2S3ILL5_9POAL; Uncharacterized protein
STRINGPavir.Ia01569.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122282638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.12e-33myb domain protein 87