PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG267700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 547aa    MW: 58224.4 Da    PI: 10.3256
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG267700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.31.6e-16105139135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++Cgt  Tp+ R+gpdg++tLCnaCG++yr+ +l
  Pavir.9NG267700.1.p 105 CRHCGTNRTPQRREGPDGPSTLCNACGVRYRSGRL 139
                          *******************************9885 PP
2GATA53.82.6e-17465499135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++Cgt +Tp+WR+gp+g  tLCnaCG++y+  +l
  Pavir.9NG267700.1.p 465 CRHCGTEETPQWREGPEGRWTLCNACGVRYKTGRL 499
                          *******************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011410.31799135IPR000679Zinc finger, GATA-type
SMARTSM004013.1E-1099149IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-12101162No hitNo description
CDDcd002023.20E-12104153No hitNo description
Gene3DG3DSA:3.30.50.105.3E-11104136IPR013088Zinc finger, NHR/GATA-type
PfamPF003204.9E-14105139IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.43E-13458518No hitNo description
PROSITE profilePS5011412.281459495IPR000679Zinc finger, GATA-type
SMARTSM004012.5E-15459509IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.8E-14463497IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.41E-13464514No hitNo description
PfamPF003203.3E-15465499IPR000679Zinc finger, GATA-type
PROSITE patternPS003440465490IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MVVVDALHDD SAAAIADYLF GGGADLQLFL DHVAVEVKAS GGDGDEGEEE LEWLSNKDAF  60
PTVETMGPSA PRPRTKGARR PRWEVASSTP RAPVVARAPP AGWRCRHCGT NRTPQRREGP  120
DGPSTLCNAC GVRYRSGRLV PEYRPARSPT FSPELHSNQH RLVVEMRRRR EAAAQASVAA  180
AGNSEEKGGE KLECLSKKGE FLAEQVMAVA AAGPRTEGMR RPRKAVEWPA IAWSPPPPPR  240
APAVAGRRPS LEGGAGVAVE QGRAPDGGDD GVGGCAAADR GRAAVSAHGG LNPAASLAAA  300
TAAGRPCQQS GTEKAPQWLV GYRSSCMVPE LRFDWHNRVK LHRRAVRVAN FCPATAGDGE  360
EGKEELSWPW PSNNDAFPAV KAMPTPAARP QTKGVRRRRR VVEVSPPRTP PPSRRRSRRA  420
GAVAVEQGRA GDGVAAAVEG RVAVPAGGGE VATAPRAPAA TRRQCRHCGT EETPQWREGP  480
EGRWTLCNAC GVRYKTGRLV PEYRPASSPT FSPGLHSNCH HKVVRLRRRR EESTEAASAA  540
AAAGDK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG267700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796227.10.0uncharacterized protein LOC112876348
TrEMBLA0A2T7C6420.0A0A2T7C642_9POAL; Uncharacterized protein
STRINGPavir.Ia04743.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2765644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.16e-28GATA transcription factor 1