PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG279700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 381aa    MW: 41637.2 Da    PI: 4.5989
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG279700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM28.44.5e-0971406127
                  NAM   6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..........kvkaeekewyfFskrdkkyatgk....rknr.atks 80 
                           F+P+d+      L +++++   +l ++++++d+++++P dL +             + +  w f+++++ k+a+gk    r++  a  +
  Pavir.9NG279700.1.p   7 SFRPRDDASSIA-LLRSLRSGAADL-SFVHRADVCSADPTDLVAnlepvpgtdlDQGGYNAIWLFYCPKRYKNAQGKpsghRQRAiAGGD 94 
                          588888776645.555666666677.78**************744778887754222344589********9997665552444433447 PP

                  NAM  81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyr 127
                          + W++  + k+v+     ++ +   L +   +g++++ ++  W+m ey 
  Pavir.9NG279700.1.p  95 ACWHSETRPKPVKG-LAGATLC--NLSYGrkEGSSRSFNRMGWCMTEYD 140
                          78**********98.3334444..455553378999999*********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.0142156IPR003441NAC domain
SuperFamilySSF1019411.96E-128156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MAAEDISFRP RDDASSIALL RSLRSGAADL SFVHRADVCS ADPTDLVANL EPVPGTDLDQ  60
GGYNAIWLFY CPKRYKNAQG KPSGHRQRAI AGGDACWHSE TRPKPVKGLA GATLCNLSYG  120
RKEGSSRSFN RMGWCMTEYD EEGGGDGHVL CKVYRSSSSL AKGKLKLKPS WTSTNPTSSE  180
QAAQCSSASK RKATADHPHA RPSKISHVQA CACTSSYTCV DQDFYQHVDH QLQEPLLTDD  240
QITMPVGIDY ESLFLAEEEQ EQVQQQNTMV TAEVDQFQQN TLVTTAEEQQ LQLNTMDGLL  300
GDQGYHEDGS CSANTQFTMD QFLENIQFTM EELMGGPVYG EYGGCSPNTQ FTMDEMFSRC  360
CGPPTAVAPM DAGFFDGLAF *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG279700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463549.13e-51uncharacterized protein LOC8079646
TrEMBLA0A2S3IGW51e-171A0A2S3IGW5_9POAL; Uncharacterized protein
STRINGPavir.J34372.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4574632