PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG280500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 241aa    MW: 25502.1 Da    PI: 10.7696
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG280500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35e-2080129255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                          +++GVr+++ +grW+AeIrdp     +  +r +lg+f taeeAa+a++aa  +l+g
  Pavir.9NG280500.1.p  80 HFRGVRRRP-WGRWAAEIRDP-----HsrRRLWLGTFNTAEEAAAAYDAANIRLRG 129
                          69*******.**********7.....335*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.8E-1480129IPR001471AP2/ERF domain
SMARTSM003804.8E-3380143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-3080138IPR001471AP2/ERF domain
PROSITE profilePS5103223.86880137IPR001471AP2/ERF domain
CDDcd000181.87E-1880137No hitNo description
SuperFamilySSF541717.85E-2280137IPR016177DNA-binding domain
PRINTSPR003671.9E-108192IPR001471AP2/ERF domain
PRINTSPR003671.9E-10103119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGPNPSLQQL VAVAAVKASE PPPPPRARVV RILVHDADAT DSSSSEDEAP PPPRRARGGS  60
SSVGAKRRVM EAAGANSPVH FRGVRRRPWG RWAAEIRDPH SRRRLWLGTF NTAEEAAAAY  120
DAANIRLRGA SAPTNFPSAR YSLPPEPAKP IISLTPEPGK VITLPPVPVK PTVPLQVKKE  180
GGSYYGQVEG GSSELNAFAP KPLWEMIPGK RKKRPGCGNG SCLRIAIHAA SVCVEEVGGA  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1880137563ATERF1
3gcc_A2e-1880137563ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.77040.0callus| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG280500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981291.11e-128ethylene-responsive transcription factor CRF1
SwissprotQ9SUE37e-29CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLK4AEA21e-126K4AEA2_SETIT; Uncharacterized protein
STRINGPavir.J00119.1.p1e-171(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115732835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03800.14e-19ERF domain protein 10
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]