PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG287200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 404aa    MW: 42862.2 Da    PI: 6.9134
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG287200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.71.2e-33190247259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqK vk+s+fprsYYrCt+++Cpvkk+vers +d  vv++tYeg+H+h+
  Pavir.9NG287200.1.p 190 EDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCPVKKRVERSFQDAAVVITTYEGKHTHP 247
                          8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-35174249IPR003657WRKY domain
SuperFamilySSF1182903.4E-29181249IPR003657WRKY domain
PROSITE profilePS5081131.904184249IPR003657WRKY domain
SMARTSM007744.3E-40189248IPR003657WRKY domain
PfamPF031061.7E-26190247IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MSGARHDHAG AGGHHQHHFS GDFQFHDELA SLFAQQPDAP TPMMQQPWFT DYLHASAPTP  60
LDYDAFAGDD FDVPAVDDDV KRELVVDTTG AAAGSGGGTT TAPLTPNSMS MSSTSSEACG  120
AGAGAGEESA GKCKKEEGEE SKDGSAAAKG DGEGEEKNKK GSAKGKGKGE KRPRQPRFAF  180
MTKSEVDHLE DGYRWRKYGQ KAVKNSPFPR SYYRCTTQKC PVKKRVERSF QDAAVVITTY  240
EGKHTHPIPA TLRGSSHLLA AHHHANLHHQ HFRIPGVGAG GLTFRPGAFD ALGLLQPPPQ  300
QQQEGHHHAM QQLVMSGAGA AAAGSGLQQA NAMSSHALPD HQQHGLAAIV GTAGTTAATA  360
TTSATTTSAP LRMQHFMAQD YAGLLQDMFP SFIHNDDGDN HHH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-26180250878Probable WRKY transcription factor 4
2lex_A1e-26180250878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG287200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807851.11e-180uncharacterized protein LOC112886239
TrEMBLA0A2S3H9K91e-179A0A2S3H9K9_9POAL; Uncharacterized protein
TrEMBLA0A2T7EA941e-179A0A2T7EA94_9POAL; Uncharacterized protein
STRINGPavir.J12030.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.16e-48WRKY DNA-binding protein 71