PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG288100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 266aa    MW: 28638 Da    PI: 6.7915
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG288100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.2e-19113164256
                  AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+GVr+++ +g+++AeIrd  +   k +r++lg+f taeeAa a+++a+++++g+
  Pavir.9NG288100.1.p 113 SYRGVRRRP-WGKFAAEIRDtRR---KGARVWLGTFTTAEEAALAYDKAALRMRGP 164
                          69*******.**********332...34**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.33E-28112171No hitNo description
PfamPF008471.5E-14113163IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-31113171IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23113173IPR016177DNA-binding domain
SMARTSM003802.7E-36113177IPR001471AP2/ERF domain
PROSITE profilePS5103223.565113171IPR001471AP2/ERF domain
PRINTSPR003679.1E-11114125IPR001471AP2/ERF domain
PRINTSPR003679.1E-11137153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MAIGAPGSHQ PSNEAANILE NVWATIMTES ATPASSTAAS SEVGEEKPEA ILQRLPSLGR  60
WISMGAEEWD ELLLSGTALT SDASGELIVA SPASQDEDRG DRRAGSKAVA CKSYRGVRRR  120
PWGKFAAEIR DTRRKGARVW LGTFTTAEEA ALAYDKAALR MRGPRAHLNF PLDVVQRELA  180
GNSCVEASRV LRRRRRRGSN AAADTRSHGS VSATGGCDQT MVSFAFGKKD QGTSMVQERS  240
MSDPGAVIEF EDIGGEYWDY LFAPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-28112174466ATERF1
3gcc_A7e-28112174466ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188196RVLRRRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG288100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU6854121e-139KU685412.1 Saccharum spontaneum clone SES23E05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806647.11e-177ethylene-responsive transcription factor 15-like
TrEMBLA0A2S3H9P91e-176A0A2S3H9P9_9POAL; Uncharacterized protein
STRINGPavir.J34156.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116162736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.13e-21ethylene responsive element binding factor 2