PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG308700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 146aa    MW: 16968.4 Da    PI: 7.8911
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG308700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1591.5e-1828115289
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                          f+ +Y  +  F+vrk++++k k ++++ + ++vC +eg+r+e+k++ + ++ +raetrtgC+ ++ v +++ +g+++v++l+leHn  l
  Pavir.9NG308700.1.p  28 FWISYEGQNRFEVRKRYTNKIKSDERVRSCRYVCANEGHRKEDKRD-HLTKCPRAETRTGCQVRMGVILDReKGNYKVSDLVLEHNYIL 115
                          8999***************************************999.999****************999998**************877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-1328115IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MEENRVGALP LLPEVGMEFS TIDEAWMFWI SYEGQNRFEV RKRYTNKIKS DERVRSCRYV  60
CANEGHRKED KRDHLTKCPR AETRTGCQVR MGVILDREKG NYKVSDLVLE HNYILQLPET  120
SHLMAINTVP QLCIQTFYFA GGNHI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG308700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126111e-131CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBankCT8357581e-131CT835758.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA123K24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876513.14e-73protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBLA0A0N7KS914e-69A0A0N7KS91_ORYSJ; Os10g0571900 protein (Fragment)
STRINGOS10T0571900-007e-70(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-11FAR1-related sequence 5