PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG327600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 216aa    MW: 24203.8 Da    PI: 10.3194
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG327600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding285.1e-09125171347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47 
                           WT++E   lvd+v + G g+W+++ r       Rt+ ++k++w+++
  Pavir.9NG327600.1.p 125 HWTKDEMIALVDGVSRKGIGRWSKVKRVYFstSIRTPVHLKDKWRNL 171
                          6**************************9999989***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.415118176IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-9119174IPR009057Homeodomain-like
SuperFamilySSF466893.45E-13120177IPR009057Homeodomain-like
SMARTSM007177.7E-5122174IPR001005SANT/Myb domain
PfamPF002491.3E-5125171IPR001005SANT/Myb domain
CDDcd116604.11E-17126173No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MEDEMDLEQL CSGPRNEKNL HECLGVAGVF GGYSFQMESP FHSLNVLDGE AADEETIIDD  60
FDIKDYVDPS MLGCFFPSAG LGHGRRGPRR KSISARVEVG ELFGSQYPRT SGGGKGSRSR  120
KNNDHWTKDE MIALVDGVSR KGIGRWSKVK RVYFSTSIRT PVHLKDKWRN LVRACKAKSA  180
SKKKVKVQKA TEMIVQRFRR QILALEAMHL GKKKK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG327600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2S3ILW28e-86A0A2S3ILW2_9POAL; Uncharacterized protein
STRINGPavir.Ia01844.1.p1e-126(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52252134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-11TRF-like 6