PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG331300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 216aa    MW: 24859.5 Da    PI: 9.8672
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG331300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.71.3e-08129177248
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 
                           rWT+ E +llv++v ++G g+W+   ++      Rt  ++k++w+++l
  Pavir.9NG331300.1.p 129 SRWTAKEVKLLVQGVSKFGVGRWSELKKKYFktSIRTSVNLKDKWRNLL 177
                          59*************************99998878************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.767123181IPR017930Myb domain
SuperFamilySSF466891.94E-15125206IPR009057Homeodomain-like
SMARTSM007174.1E-7127179IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-12129178IPR009057Homeodomain-like
PfamPF002499.8E-7130177IPR001005SANT/Myb domain
CDDcd116609.82E-20130178No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MEQPEIKFCS PEMEQTGLFW APVQEEDQGL DGLLGDLQFG LASGTACDLQ MENYRARDDD  60
ALFVLQLLED ADLDEWLSGG LHQSPVGDTL SHHQMLGRKS GRRGMRKRRI SPWGTLVFEG  120
KYITRKNNSR WTAKEVKLLV QGVSKFGVGR WSELKKKYFK TSIRTSVNLK DKWRNLLRAY  180
QENVQKYTLL DLEPPLVEQI RKLAAKHPYP KRRHS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG331300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797447.11e-142uncharacterized protein LOC112877369
TrEMBLA0A2S3ILU91e-141A0A2S3ILU9_9POAL; Uncharacterized protein
STRINGPavir.Ia01842.1.p1e-159(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52252134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.14e-17TRF-like 6