PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG332100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 120aa    MW: 12513.8 Da    PI: 6.769
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG332100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.9e-201162155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++y+G+r ++ +g+++AeIrdp  +   +r++lg+f+taeeAa+a+++a+ + +g
  Pavir.9NG332100.1.p 11 TKYRGIRKRP-WGKFAAEIRDPERG--GARVWLGTFDTAEEAARAYDRAAFAQRG 62
                         69********.**********8333..4***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.20E-221170No hitNo description
PfamPF008477.6E-141162IPR001471AP2/ERF domain
SMARTSM003807.9E-331276IPR001471AP2/ERF domain
PROSITE profilePS5103224.0781270IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-231270IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.9E-311270IPR001471AP2/ERF domain
PRINTSPR003675.2E-121324IPR001471AP2/ERF domain
PRINTSPR003675.2E-123652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MEDGSKDAGG TKYRGIRKRP WGKFAAEIRD PERGGARVWL GTFDTAEEAA RAYDRAAFAQ  60
RGAAAVLNFP GEAVAGGAMS RGGAGGSSSS PPPSGRARGD AEKIELECLD DRILDEVRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-28176178Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG332100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282778e-63KJ728277.1 Zea mays clone pUT6555 AP2-EREBP transcription factor (EREB74) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002464556.27e-45ethylene-responsive transcription factor ERF096
SwissprotQ9LTC54e-31ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A3L6TMC08e-45A0A3L6TMC0_PANMI; Uncharacterized protein
STRINGPavir.Ia01823.1.p5e-78(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.13e-18ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]