PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG338800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 565aa    MW: 65581.5 Da    PI: 8.0905
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG338800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.42.9e-2416119190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...............tekerrtraetrtgCkaklkvkkekdgk 75 
                          ++Yn+YAk+ GFs+r+ +s++ + ++e+ k  fvC++eg+ +++k++               t k+r++++ + t+Cka+++vk    ++
  Pavir.9NG338800.1.p  16 EYYNAYAKRNGFSIRTGTSRRATVTREMSKVSFVCNREGNGRKRKDEqtiegvadgtdngdsTAKKRKREKMQYTNCKARMVVKFI-GAR 104
                          69**************************************99999999*************99999999*****************.9** PP

                 FAR1  76 wevtkleleHnHela 90 
                          w+v+++  eHnH+l+
  Pavir.9NG338800.1.p 105 WRVIDFIAEHNHDLV 119
                          ************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.0E-2216119IPR004330FAR1 DNA binding domain
PfamPF105511.5E-8235293IPR018289MULE transposase domain
PROSITE profilePS509669.198429465IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MPFNGQTFDT KVEAREYYNA YAKRNGFSIR TGTSRRATVT REMSKVSFVC NREGNGRKRK  60
DEQTIEGVAD GTDNGDSTAK KRKREKMQYT NCKARMVVKF IGARWRVIDF IAEHNHDLVV  120
KPSLKKFMRS HKGIPREEKD FIRLLHGCNL TTGCIMQLMS EFYGSAQVTP YESKDVSNFH  180
STIIMHQALD HFRGMKEEDP GFFYKFKLDD ENRIQNLFWL DSASRHAYVE AYNDCVSFDA  240
TYMTNMYDMP FAPFIGINRH GQTFQLGHFL EAMEGKAPLN IITDQDVAMR SAIALLEEEF  300
KDCINYTVTP EEFETKWSYM TDKRSIQHGL HGNEHFQHLY DLRKSFVPAY YMHCFFPFLQ  360
STQRSERFNA ILTKYVNPNM SILHFVEQYQ KIQDKYLVAQ DGQDFSTEEK ERRRWSWYPI  420
EKHAATRVYL VTAFEEHESY ICECNKFERD GMLCCHIMKI MTRLGVKDIP ERYIQKKVDA  480
TSSDFAARGM PMNSKKTVRL VNMSSAFSSL AIEGSVSDET YAVIDSHINM MHAEILEIKT  540
RTKHQGASTH HDVTNHPAAP KVLN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17986KKRKREKM
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG338800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311908.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1W0VY600.0A0A1W0VY60_SORBI; Uncharacterized protein (Fragment)
STRINGPavir.J00335.1.p1e-155(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.11e-60FAR1 family protein