PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG341400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 699aa    MW: 79416.2 Da    PI: 6.9247
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG341400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1531.1e-16215294190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          +fYn Y+ evGF +r  +s+++++++  t ++ vC + g+++e++++         + r+gC+a++++ + k+g w++++   eHnH+l+
  Pavir.9NG341400.1.p 215 EFYNLYSWEVGFGIRFGRSRRNSEKT-KTIQDIVCICAGRTKEDNTR---------SYRCGCRAMIRLARLKSGGWYIKEHIAEHNHQLS 294
                          6********************96555.77889*******99987655.........99******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.3E-13215294IPR004330FAR1 DNA binding domain
PfamPF105511.8E-28416509IPR018289MULE transposase domain
PROSITE profilePS500208.985540576IPR001202WW domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MEEDLFQGFQ GNMDPVDPVL PSWLEAAPGL AVESKARGIE GSPGLELKNR DETCGTRELD  60
LNKDALADVF EDIFGSECQS LGGSSGEGAF RVGTLEQENL IESNLHRDDS ASCSGVCDCG  120
KECLLRTDQS GSVLADASSS CSLFGGENVA ESDHGVSNQL QKRPRLGSIA DEEEETTMNP  180
TALEKALKNF VIRKNGLVVQ PSVGTNFDSM AEAFEFYNLY SWEVGFGIRF GRSRRNSEKT  240
KTIQDIVCIC AGRTKEDNTR SYRCGCRAMI RLARLKSGGW YIKEHIAEHN HQLSECFAEK  300
KEWRSHRHID VHTKQLIKHL RDNNVNLTKV FSIISSFFGA AGNAPFTKRS VRNLCAKIAR  360
DNADDDIGKT VVLFSKLKEQ DPDFTYSVEL DEDCRIKTIL WTNGRSRRHY ACFGDVITFD  420
TTYKTNLYDM PFGLFIGVNN HFQSVILGGV LMRNETIKSF KWIFTEFVRL MGGKEPITIL  480
TDQSKAMEAA IKEVLANTTH IWCRWHVLRK AKEHLGELYS RRSGFKEEFH KLINSMLTIQ  540
EFEDGWDHML NKYNLHSNTY FLQIYSNRVR WAKPYLKGKF CAGQTSTQRS ESGNSMLKRY  600
VGTSCPMHQF VQMYQQLQFD REEEESREER ASKLAGRYIK YNIPIEVHAA RIYTRKMHQK  660
FCDLIWDLAL DTCLALDLSI CLAMTFNILI LLYSLSLP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG341400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185807.10.0uncharacterized protein LOC109771528
TrEMBLA0A453GSN40.0A0A453GSN4_AEGTS; Uncharacterized protein
STRINGPavir.Db00839.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-73FAR1-related sequence 5