PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG341400.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 673aa    MW: 76543.9 Da    PI: 6.8358
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG341400.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR153.11e-16215294190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          +fYn Y+ evGF +r  +s+++++++  t ++ vC + g+++e++++         + r+gC+a++++ + k+g w++++   eHnH+l+
  Pavir.9NG341400.3.p 215 EFYNLYSWEVGFGIRFGRSRRNSEKT-KTIQDIVCICAGRTKEDNTR---------SYRCGCRAMIRLARLKSGGWYIKEHIAEHNHQLS 294
                          6********************96555.77889*******99987655.........99******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.1E-13215294IPR004330FAR1 DNA binding domain
PfamPF105511.7E-28390483IPR018289MULE transposase domain
PROSITE profilePS500208.985514550IPR001202WW domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MEEDLFQGFQ GNMDPVDPVL PSWLEAAPGL AVESKARGIE GSPGLELKNR DETCGTRELD  60
LNKDALADVF EDIFGSECQS LGGSSGEGAF RVGTLEQENL IESNLHRDDS ASCSGVCDCG  120
KECLLRTDQS GSVLADASSS CSLFGGENVA ESDHGVSNQL QKRPRLGSIA DEEEETTMNP  180
TALEKALKNF VIRKNGLVVQ PSVGTNFDSM AEAFEFYNLY SWEVGFGIRF GRSRRNSEKT  240
KTIQDIVCIC AGRTKEDNTR SYRCGCRAMI RLARLKSGGW YIKEHIAEHN HQLSECFAEK  300
KEWRSHRHID VHTKQLIKHL RDNNVNLTKV FSIISSFFGA AGNAPFTKSK LKEQDPDFTY  360
SVELDEDCRI KTILWTNGRS RRHYACFGDV ITFDTTYKTN LYDMPFGLFI GVNNHFQSVI  420
LGGVLMRNET IKSFKWIFTE FVRLMGGKEP ITILTDQSKA MEAAIKEVLA NTTHIWCRWH  480
VLRKAKEHLG ELYSRRSGFK EEFHKLINSM LTIQEFEDGW DHMLNKYNLH SNTYFLQIYS  540
NRVRWAKPYL KGKFCAGQTS TQRSESGNSM LKRYVGTSCP MHQFVQMYQQ LQFDREEEES  600
REERASKLAG RYIKYNIPIE VHAARIYTRK MHQKFCDLIW DLALDTCLAL DLSICLAMTF  660
NILILLYSLS LP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG341400.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185807.10.0uncharacterized protein LOC109771528
TrEMBLA0A453GSN40.0A0A453GSN4_AEGTS; Uncharacterized protein
STRINGPavir.Db00839.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-69FAR1-related sequence 5