PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG345400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 474aa    MW: 54274.1 Da    PI: 9.0858
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG345400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.52.2e-1843130289
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                          f+ +Y+ ++GF+vrk++++ sk +g++t+ ++ Cs++ +r++ + + + ++  raetrt+Cka+  v+ ++  g++evt++ leHnH l
  Pavir.9NG345400.1.p  43 FWVAYGGSTGFDVRKRYTNVSKIDGKVTSCRYICSNKDHRRKGQID-HATKCFRAETRTDCKARTIVTVDRvAGNYEVTDVGLEHNHLL 130
                          9****************************************99999.99999*****************999***************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-1443130IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.052412448IPR007527Zinc finger, SWIM-type
PfamPF044345.4E-6422445IPR007527Zinc finger, SWIM-type
SMARTSM005751.7E-5423450IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MSKAADGKDR RCVEMMPRMA RMPRSSANCT CASWLSRGAR ETFWVAYGGS TGFDVRKRYT  60
NVSKIDGKVT SCRYICSNKD HRRKGQIDHA TKCFRAETRT DCKARTIVTV DRVAGNYEVT  120
DVGLEHNHLL HLPETFHLMK TQRKISELQA FDIETADDFG IRPKSAHEMA ARQVGGPFNL  180
SYTCRDQKNY LKSKRQRELA FGQAGSTLKY FHEKVIENPS FQYALQLDSA HNGKQPRTIY  240
TDQDATMGKD IKIIFTESYH GLACIYGHED EASFEEAFQI MRSKVHKQTW LGSIYMVKEK  300
WLSESFNNAL KNHLKSDFGI IRFLKHFERS VQEKRDKELE SEFEARKNVP RRLMCTPMLV  360
QASQVYTPVI IEAFQGEYEG SMVACARVLD GEHKYAVVVG NLFGELSSEV EYIVLSDPLH  420
QKASCSCKMF ERTGILCAHG LKVLDLMNIK RLPLHYILNR WAREARNGNI VDR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191196KSKRQR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.111166e-61root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG345400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0055141e-178AP005514.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0035A24.
GenBankAP0149581e-178AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A452ZGR60.0A0A452ZGR6_AEGTS; Uncharacterized protein
STRINGBRADI2G05367.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-23FAR1-related sequence 5