PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG356600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CAMTA
Protein Properties Length: 1027aa    MW: 114084 Da    PI: 5.4375
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG356600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1171.21.6e-53211382118
                 CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahsee 90 
                          lke ++rwl++ ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kk d ktv+E+he+LK g+++vl+cyYah+ee
  Pavir.9NG356600.1.p  21 LKEaQHRWLRPAEICEILKNYRNFRIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKNDQKTVKEAHERLKSGSIDVLHCYYAHGEE 110
                          45559************************************************************************************* PP

                 CG-1  91 nptfqrrcywlLeeelekivlvhylevk 118
                          n +fqrr+yw+Lee++ +ivlvhyle+k
  Pavir.9NG356600.1.p 111 NINFQRRTYWMLEEDFMHIVLVHYLETK 138
                          *************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.3217143IPR005559CG-1 DNA-binding domain
SMARTSM010761.3E-7120138IPR005559CG-1 DNA-binding domain
PfamPF038595.7E-4823136IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.9E-6447534IPR013783Immunoglobulin-like fold
SuperFamilySSF812966.8E-17448534IPR014756Immunoglobulin E-set
PfamPF018339.9E-7448526IPR002909IPT domain
SuperFamilySSF484039.79E-16621742IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.0E-16631743IPR020683Ankyrin repeat-containing domain
CDDcd002041.47E-11643740No hitNo description
PROSITE profilePS500888.683649681IPR002110Ankyrin repeat
PROSITE profilePS5029715.937649714IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.736682714IPR002110Ankyrin repeat
SuperFamilySSF525401.73E-8842894IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.086843865IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.407844873IPR000048IQ motif, EF-hand binding site
PfamPF006120.0032845864IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0022866888IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.56867891IPR000048IQ motif, EF-hand binding site
PfamPF006122.0E-4869888IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1027 aa     Download sequence    Send to blast
MASAEARRLA VVPHLDIEQI LKEAQHRWLR PAEICEILKN YRNFRIAPEP PNRPPSGSLF  60
LFDRKVLRYF RKDGHNWRKK NDQKTVKEAH ERLKSGSIDV LHCYYAHGEE NINFQRRTYW  120
MLEEDFMHIV LVHYLETKGG KSSRARVNNN MIQEAAVDSP LSQLPSQNIE GESSLSGQAS  180
EYEEAESDIY SGGAGYHSFT GMQQHENGTG PVIDSSVFSS YTPASSIGNY QGLHPMTQNT  240
SFYPGNQHSS PLVLNESSTG VAMNGYANQI DPTSWNPVIE LDNGPVQMPL QFPVPPEQGT  300
STEGLGIDYL TFDEVYSDGL SLKDIGDAGA GGESFWQFPG ATGDLSTPES SFPQPNDGSL  360
EAAIGYPFLK TQSSNLSDIL KDSFKKTDSF TRWMSKELLE VEDSQIQSSS GAYWSTEEAD  420
SIIEASSREP LDQFTVSPML SQDQLFSIVD FAPTWTYVGS KTKILVTGSF LNNSKVTERC  480
KWSCMFGEVE VPAKILADGT LLCYSPQHKP GRVPFYITCS NRLACSEVRE FEFRPTVTQY  540
MDTPSPHGAT NKVYFQVRLD KLLSLGPDEY QATVSNPSLE MIELSKKITS LMASNDEWSN  600
LLKLAVDNEP STDDQQDQFA ENLIKNKLHV WLLNKVGVGG KGPSVLDDEG QGVLHLAAAL  660
GYDWAIRPTL AAGVNINFRD VHGWTALHWA AFCGRERTVV ALIALGAAPG ALTDPSPDFP  720
ESTPADLASA NGQKGISGFL AESSLTSHLQ ALNLKEANMA EISGLPGIGD VTERDSLQPP  780
SGDSLGPVRN AAQAAARIYQ VFRVQSFQRK QAAQYEDDKG GLSDDRALSL LSVKPSKPGQ  840
LDPLHSAATR IQNKFRGWKG RKEFLLIRQR IVKIQAHVRG HQVRKHYRKI VWSVGIVEKV  900
ILRWRRRGAG LRGFRSTEAS TEGSSGGTSS NMIKDKPSGD DYDFLQEGRK QTEERLQKAL  960
ARVKSMAQYP EARDQYQRIL TVVSKMQESQ AMQEKMLEES AEMEDGYFMN ELQELWDDDT  1020
PLPGYF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.70630.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG356600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793388.10.0calmodulin-binding transcription activator 3-like isoform X2
TrEMBLA0A3L6TUJ20.0A0A3L6TUJ2_PANMI; Calmodulin-binding transcription activator 3-like isoform X2
STRINGPavir.Ia02749.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1