PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG367000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 447aa    MW: 47987.6 Da    PI: 6.7419
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG367000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY971.2e-30206264259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+++Hnh+
  Pavir.9NG367000.1.p 206 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPSMLVITYTSDHNHP 264
                          699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.742200266IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.3E-31200266IPR003657WRKY domain
SuperFamilySSF1182905.36E-26203266IPR003657WRKY domain
SMARTSM007746.3E-37205265IPR003657WRKY domain
PfamPF031061.5E-25207264IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MCDFFWMSPA DQGDLSDVVR ASLQQQQPHL RLPATPAPAA VCRCSHGSLG SRHLPEEEEL  60
LLLLQQGRVN LVDGDHEAHL QQQQRQLVRG NGGMGLVVGS NAALYPHPQH HPEAEGLVIP  120
QLMSGPPQPQ LCAPSSSFAE REDDAAHAPA VPEELGLDTA MATHPHASSI KRRKSQTKKV  180
VCIPAPVAPP PGVGGRPSTS GEVVPSDLWA WRKYGQKPIK GSPYPRGYYR CSSSKGCSAR  240
KQVERSRTDP SMLVITYTSD HNHPWPMQRN ALAGSIRPAA ASSSSTSSAK NHHHQHRSSV  300
AADAVPYPTP PHRRHASNVA VANNCNATPP AAGSITASVH HHQLLKQEVL DMDNLEPALD  360
AAADDDHLGG MIADVDGALN VLCASSFHYS KKQQQHATAG QPEELPEEED KLQLLLDRDP  420
FSFSFFDWVG ASFGVGEAAA NQGGYC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B7e-23174266279Disease resistance protein RRS1
5w3x_D7e-23174266279Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG367000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0187276e-76AC018727.10 Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence, complete sequence.
GenBankAP0149666e-76AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126186e-76CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
GenBankKC9546106e-76KC954610.1 Oryza sativa Japonica Group cultivar Dongjin WRKY2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794089.10.0probable WRKY transcription factor 14
TrEMBLA0A2S3IN850.0A0A2S3IN85_9POAL; Uncharacterized protein
STRINGPavir.J03888.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118473039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.11e-53WRKY DNA-binding protein 35