PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG381700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 215aa    MW: 24724.9 Da    PI: 8.4713
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG381700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.52e-2232120189
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                          +f+ +Y+ +vGF+vrk+++++sk +g++t+ ++vC keg+r+++k++ ++++++raetrtgC  ++++++++ ++++e  +l+  HnH l
  Pavir.9NG381700.1.p  32 SFWVNYGGRVGFEVRKRYTNESKFDGKVTSCRYVCAKEGFRARDKRD-HTTKNPRAETRTGCPVRMTLTLDRvSENYEALDLVIVHNHVL 120
                          59******************************************999.99**********************9***************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.5E-1833120IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MAERRGRLRE NVNPSWVPQV GQKFSNLDDA WSFWVNYGGR VGFEVRKRYT NESKFDGKVT  60
SCRYVCAKEG FRARDKRDHT TKNPRAETRT GCPVRMTLTL DRVSENYEAL DLVIVHNHVL  120
HLPQTCHLML SQRKISEVQA FEIEAADDLG IRPKAAHELA SRQVGGPMNL SYTCDQKNYL  180
QGSMLKYFQD KISENPSFHY ALQLDVEEHI TNIF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG381700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462668.11e-101protein FAR1-RELATED SEQUENCE 5
TrEMBLK3Z0189e-95K3Z018_SETIT; Uncharacterized protein
STRINGSb02g029930.11e-101(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-21FAR1-related sequence 5