PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9NG384300.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 458aa MW: 49756.7 Da PI: 5.3824

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG384300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	57.3	5.2e-18	14	158	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvka..eekewyfFskrdkkya............tgkrkn 75 p+G+rF Pt el+ L +++g+ +l++++++v+i++++P++L +++k+ e++ +yf s r+ +++ +++r+ Pavir.9NG384300.1.p 14 PRGYRFVPTSLELI-SILSDQIRGRAlpPPLHTIFHDVRILDYHPEELYERFKHasEHRFLYFLSVREFQKPgagaavpedkdqKERRPV 102 89**********.78***9976677778**********865544114445588888887777777777776554455788 PP NAM 76 ratksgyWkatgkdkevlsk...kgelvglkktLvfy.kgrapkgektdWvmheyr 127 r+++ g Wk +g + + +g + g t+vfy + + +g+k++W mhe+ Pavir.9NG384300.1.p 103 RVARGGGWKPSGGGQVLRWPrknGGFVAGRMVTMVFYdRVDGGDGVKSNWGMHEFL 158 8899****9776665544455569999**556999*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.29E-23	8	173	IPR003441	NAC domain
PROSITE profile	PS51005	22.927	13	179	IPR003441	NAC domain
Pfam	PF02365	1.5E-9	14	157	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
MAAADGSLTK HGFPRGYRFV PTSLELISIL SDQIRGRALP PPLHTIFHDV RILDYHPEEL 60 YERFKHASEH RFLYFLSVRE FQKPGAGAAV PEDKDQKERR PVRVARGGGW KPSGGGQVLR 120 WPRKNGGFVA GRMVTMVFYD RVDGGDGVKS NWGMHEFLIP VNPRLTSLTD NKYIRFYDLA 180 FSSSSQQMMP NAYDHFPGSP AAVSPCSPLQ PWGISTGINY HQPLAAGAST SHIMSPPPPQ 240 QQHPSYAQYY QYQQQQHAFS AAAEPQAHTT HGAEFPGNMY QQYQLAIPPP AVVVPTAAAN 300 PEAAHQPPAM ATRCAGQQDE AGPSGATRSP SPPPAAATEP GRVQVPDCVK MMEVAAPPTL 360 EGIAPPVAKD ESLDDADDYS ELGMPDWNSN FDLMPLDDSY LQFTMEELLG VFPAFDGEPP 420 AMEGDGNNSG GENYGQASDG GAKEKLLVVD RCILISS*

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

MAAADGSLTK HGFPRGYRFV PTSLELISIL SDQIRGRALP PPLHTIFHDV RILDYHPEEL  60
YERFKHASEH RFLYFLSVRE FQKPGAGAAV PEDKDQKERR PVRVARGGGW KPSGGGQVLR  120
WPRKNGGFVA GRMVTMVFYD RVDGGDGVKS NWGMHEFLIP VNPRLTSLTD NKYIRFYDLA  180
FSSSSQQMMP NAYDHFPGSP AAVSPCSPLQ PWGISTGINY HQPLAAGAST SHIMSPPPPQ  240
QQHPSYAQYY QYQQQQHAFS AAAEPQAHTT HGAEFPGNMY QQYQLAIPPP AVVVPTAAAN  300
PEAAHQPPAM ATRCAGQQDE AGPSGATRSP SPPPAAATEP GRVQVPDCVK MMEVAAPPTL  360
EGIAPPVAKD ESLDDADDYS ELGMPDWNSN FDLMPLDDSY LQFTMEELLG VFPAFDGEPP  420
AMEGDGNNSG GENYGQASDG GAKEKLLVVD RCILISS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG384300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025791727.1	1e-121	NAC domain-containing protein 72-like
TrEMBL	A0A3L6TIB2	0.0	A0A3L6TIB2_PANMI; Uncharacterized protein
STRING	Pavir.Ia01976.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3563	23	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01520.1	7e-09	NAC domain containing protein 67

Link Out ? help Back to Top
Phytozome	Pavir.9NG384300.1.p