PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG394400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 405aa    MW: 42796.7 Da    PI: 9.4859
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG394400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.53.6e-30331389259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           D y+WrKYGqK++kgs++pr+YYrC+s+ +Cp++k+ver+++d +++++tYe++Hnh 
  Pavir.9NG394400.1.p 331 ADNYSWRKYGQKPIKGSPHPRGYYRCSSKkDCPARKHVERCRSDASMLIVTYENDHNHA 389
                          69**************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105338.1E-13294328IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.5E-33318391IPR003657WRKY domain
PROSITE profilePS5081130.722325391IPR003657WRKY domain
SuperFamilySSF1182901.57E-26326391IPR003657WRKY domain
SMARTSM007742.6E-36330390IPR003657WRKY domain
PfamPF031064.9E-26332388IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MEVVEEANRA AVESCKKLVA FLSLSTGDGF RPMPVAAETD EVVARFSKVV AVLSDRLGHA  60
RARIGKRSPA LPVGVDASCL LDRPSSLAPG HTPNGGHVVS STPAPPPSAA TTAATMRSVA  120
PMRSQETEVA PAVLLSPCAS VAPAAAKKFD TNMFLETPLL ELNSCGVLPS PAMAAAQKNT  180
STVVTAPSPN PCTTIAAHIQ FQPQPQQQQA KKQKSFQFDQ TPRGEQFHIE VPVPLPRGGG  240
GGAAKEVISF SFDNNSVCTS SAATSFFTSI SSQLISMSDA ATSSAATAKK ACAKRGEDGS  300
VKCHCPKKKK PREKRVVRVP AISDKNADIP ADNYSWRKYG QKPIKGSPHP RGYYRCSSKK  360
DCPARKHVER CRSDASMLIV TYENDHNHAQ PLDPSVLTAT AAEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-203283911274WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG394400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432520.0AC243252.2 Panicum virgatum clone PV_ABa094-H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796685.10.0protein WRKY1-like
TrEMBLA0A2T7BZR70.0A0A2T7BZR7_9POAL; Uncharacterized protein
STRINGPavir.J06035.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127053036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.11e-36WRKY DNA-binding protein 7