PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG400000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 205aa    MW: 21424.1 Da    PI: 8.2206
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG400000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_157.92.1e-18133185355
                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                          +++r +r++kNRe+A rsR+RK+a++ eLe++vk L++eN++L+ + e+l+  
  Pavir.9NG400000.1.p 133 SDRRKKRMIKNRESAARSRARKQAYVRELEQEVKLLQQENESLRVKYEQLRVS 185
                          689******************************************99999765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.1E-14131195IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.0E-15133186No hitNo description
PROSITE profilePS5021712.082133183IPR004827Basic-leucine zipper domain
PfamPF001704.1E-16134185IPR004827Basic-leucine zipper domain
CDDcd147071.17E-21135182No hitNo description
SuperFamilySSF579594.19E-13135184No hitNo description
PROSITE patternPS000360138153IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:2000028Biological Processregulation of photoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MAAAMDLEDD EDFWGNTASS PSASPPGSLA AAAVSPCGAF ISTQLSLNSR LHLLSTAGGS  60
SALGAGIYAA DDGRHHMDLG GGFRNAAASP APFFSAYNPA AGAGTARSVL EDEMCLGPDA  120
AAATWAGAGV GGSDRRKKRM IKNRESAARS RARKQAYVRE LEQEVKLLQQ ENESLRVKYE  180
QLRVSVEVAV PVKKTLQRMP SAPF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG400000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0937892e-71EF093789.1 Zea mays delayed flowering1 (DLF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803630.11e-109ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBLA0A2S3H1W21e-108A0A2S3H1W2_9POAL; Uncharacterized protein
STRINGPavir.J04490.1.p1e-147(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97643044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17770.24e-16basic region/leucine zipper motif 27