PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG402700.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 387aa    MW: 43007.3 Da    PI: 4.9832
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG402700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM522.3e-162213110128
                  NAM  10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdkevlskkge 98 
                          ++eelv ++L+++ ++++l+  +v+  +d   v+P+ +        + wy   + d++ ++  +++ r++k+gyWk+  +  +v + +  
  Pavir.9NG402700.2.p  22 SEEELV-RFLAERKAEDPLPQ-DVLVGLDFSLVDPRIFT------VDTWYLSWSDDQQPNNsAENSIRKAKNGYWKHAESC-KVPT-SIG 101
                          689999.99999999999999.99************996......3568765555554443256677899******88774.4555.477 PP

                  NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                           +g+k +L fy+g+ap g++t Wvmhey++
  Pavir.9NG402700.2.p 102 IMGVKIILEFYEGQAPCGKRTGWVMHEYQV 131
                          8***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-2411152IPR003441NAC domain
PROSITE profilePS5100526.00613152IPR003441NAC domain
PfamPF023658.8E-1122131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MCPSNPELKL AALNISIRDS WSEEELVRFL AERKAEDPLP QDVLVGLDFS LVDPRIFTVD  60
TWYLSWSDDQ QPNNSAENSI RKAKNGYWKH AESCKVPTSI GIMGVKIILE FYEGQAPCGK  120
RTGWVMHEYQ VEHNDEANLP QDYKSLCRVF FQGDKKLDAK SQQNSINVDA HNDNLETYLQ  180
YLAKLEEPKV TADANEEDVC SSKVQFEQKH QSALDDTDVI ATGDYIELND LLTSEASAST  240
SENSSKRSMV SEDYFDSDAF LREILKGSNT TDGQNQDHKF SIAAPTKSAN VVLSPSEQGV  300
VHFHDNNGMV PVTSHQKPVP EGDRGEHSSQ GFQQHSLSVS SYFPSSHVKG SHSNSSNSSQ  360
SSIKSHKEQS TSKFGKIGKY CCFGSF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.387940.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG402700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797455.10.0NAC domain-containing protein 76-like isoform X3
TrEMBLA0A2T8I3200.0A0A2T8I320_9POAL; Uncharacterized protein
STRINGPavir.Ia02619.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63790.14e-16NAC domain containing protein 102