PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG415200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family SRS
Protein Properties Length: 337aa    MW: 33469 Da    PI: 8.9681
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG415200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702212.88.2e-661092684154
               DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrkrel..kskkqs 84 
                           ++sCqdCGn+akkdCah+RCRtCC+srgf+C thvkstWvpaakrrerqqqlaa+ + aa+s+       a+aaskr+rel  +  +  
  Pavir.9NG415200.1.p 109 AGTSCQDCGNNAKKDCAHMRCRTCCRSRGFSCPTHVKSTWVPAAKRRERQQQLAALFRGAANSNsasaaaaAAAASKRPRELvrSLGRLP 198
                          4579***************************************************99998888777788777788888888855333444 PP

               DUF702  85 alsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                          +++s+ +++++s+      ++P+e+++eavfrcvr++ vd+ ++elaYqtavsigGh+fkGiL+++G+++
  Pavir.9NG415200.1.p 199 SANSAMVTTTTSSGDGGGGRFPPELNVEAVFRCVRIGPVDEPDAELAYQTAVSIGGHTFKGILRNHGPAD 268
                          44555555555555666778***********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.5E-62110267IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.2E-25112154IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016244.7E-18218266IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MAGFSLRGGG GGGGRGGDRA GDHPIGADSL FLYARGAAAA AADTAASGGG GGGIGFQLWH  60
PHQQAAAAPH TSQFFSSGVA TGVVLGFSSH DGSGGIGGPG GGGAGGGRAG TSCQDCGNNA  120
KKDCAHMRCR TCCRSRGFSC PTHVKSTWVP AAKRRERQQQ LAALFRGAAN SNSASAAAAA  180
AAASKRPREL VRSLGRLPSA NSAMVTTTTS SGDGGGGRFP PELNVEAVFR CVRIGPVDEP  240
DAELAYQTAV SIGGHTFKGI LRNHGPADDA AVGQLPPSSA EYHQLTGQAR EGSSPAGSSE  300
AAATVATSAA VLMDPYPTPI GAFAAGTQFF PHNPRT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1614RGGGGGGGR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.203380.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG415200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0043291e-154AP004329.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1663_H12.
GenBankAP0054631e-154AP005463.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0712G01.
GenBankAP0149621e-154AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813341.11e-162protein SHI RELATED SEQUENCE 1
TrEMBLA0A2T7DU751e-168A0A2T7DU75_9POAL; Uncharacterized protein
STRINGPavir.J04002.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.14e-52Lateral root primordium (LRP) protein-related