PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG415700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family DBB
Protein Properties Length: 306aa    MW: 31639.5 Da    PI: 5.1837
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG415700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.45.2e-07447542
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                         +C+ ++ +++   C  ++  lC  C    H+       H+++pl
  Pavir.9NG415700.1.p  4 RCDVCGAEPAAVLCCADEAALCSACDRRVHRAnkladkHRRIPL 47
                         8*****************************77999999999886 PP
2zf-B_box21.74.1e-0762102337
             zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                          ++ C+ ++e +   fC +++  lC dC + +H+       H
  Pavir.9NG415700.1.p  62 APLCDVCKERRGLVFCVEDRAILCLDCDDPIHSAndltakH 102
                          579*****************************655555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.352147IPR000315B-box-type zinc finger
SMARTSM003362.0E-9147IPR000315B-box-type zinc finger
CDDcd000212.36E-6347No hitNo description
PfamPF006436.3E-6447IPR000315B-box-type zinc finger
PROSITE profilePS501199.24360107IPR000315B-box-type zinc finger
SMARTSM003363.4E-1560107IPR000315B-box-type zinc finger
CDDcd000211.17E-663107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MLVRCDVCGA EPAAVLCCAD EAALCSACDR RVHRANKLAD KHRRIPLLHP SGDDSAAAAA  60
AAPLCDVCKE RRGLVFCVED RAILCLDCDD PIHSANDLTA KHSRFLLVGA KLSAGLVDQA  120
PPSLDDCRGS GSDEPHDVAA ICPPQAAKSL ALDCSNSHGG GGGGGGGGGG GSSGGSSSIS  180
DYLTNICPGW RVDDLLFDDA AFSAASEEAR RDEHEQVPSL DADLFDVVAG RPGKRGAWYG  240
GAMGLEKVPA AAASIAVPTA AKQQGRVRER HWSCDSDSDV FAVPEISQPP PAKKARPPAP  300
TFWCF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.12310.0callus| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG415700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0384501e-122BT038450.1 Zea mays full-length cDNA clone ZM_BFb0234M06 mRNA, complete cds.
GenBankEU9680731e-122EU968073.1 Zea mays clone 313792 salt tolerance-like protein mRNA, complete cds.
GenBankHQ8587761e-122HQ858776.1 Zea mays clone UT1762 ORPHAN transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812143.11e-171B-box zinc finger protein 20-like
TrEMBLA0A2T7DU711e-172A0A2T7DU71_9POAL; Uncharacterized protein
STRINGPavir.J07618.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121002430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.11e-40salt tolerance homolog2