PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9NG432000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 143aa MW: 15825.9 Da PI: 10.4464

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG432000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47.5	3.8e-15	63	107	5	49
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 +r++r++kNRe+A rsR RK+a+++eLe v +Le+e +L e Pavir.9NG432000.1.p 63 QRQKRMIKNRESAARSRDRKQAYVAELESQVTQLEEEQAELLTEQ 107 89************************************9998775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.4E-7	59	121	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.795	61	113	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.2E-12	62	113	IPR004827	Basic-leucine zipper domain
CDD	cd14707	5.08E-14	63	109	No hit	No description
SuperFamily	SSF57959	1.97E-11	63	114	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.9E-14	64	118	No hit	No description
PROSITE pattern	PS00036	0	66	81	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MTLEDFLARD SGARAAAAAA AAEGNMALGF PVPDGDAAGA GAGAGRGARK RALVDPADRA 60 VMQRQKRMIK NRESAARSRD RKQAYVAELE SQVTQLEEEQ AELLTEQEER RQQRLKELME 120 RAFPVIRKKL SRDLRRTNSM EW*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.24169	0.0	leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling (PubMed:20039193). Involved in the signaling pathway that induces growth inhibition in response to D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG432000.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by anoxia, drought, salt stress, oxidative stress, cold and abscisic acid (ABA) (PubMed:20039193). Induced by D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961953.1	3e-72	G-box-binding factor 4
Swissprot	Q0JHF1	4e-49	BZP12_ORYSJ; bZIP transcription factor 12
TrEMBL	A0A368QHW4	8e-71	A0A368QHW4_SETIT; Uncharacterized protein
STRING	Pavir.J36143.1.p	5e-95	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2665	37	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44080.1	5e-14	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pavir.9NG432000.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]