PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG435100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 214aa    MW: 21716.6 Da    PI: 8.7179
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG435100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.2e-202069255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                         +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  Pavir.9NG435100.1.p 20 RYRGVRQRP-WGKWAAEIRDP-----HraARVWLGTFETAEAAARAYDEAALRFRG 69
                         7********.**********7.....338************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.02E-192079No hitNo description
SuperFamilySSF541712.03E-222078IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.0E-332078IPR001471AP2/ERF domain
SMARTSM003801.1E-352083IPR001471AP2/ERF domain
PROSITE profilePS5103225.6862077IPR001471AP2/ERF domain
PfamPF008474.4E-142069IPR001471AP2/ERF domain
PRINTSPR003675.1E-122132IPR001471AP2/ERF domain
PRINTSPR003675.1E-124359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MEEHSPTAAA AGGGGGGERR YRGVRQRPWG KWAAEIRDPH RAARVWLGTF ETAEAAARAY  60
DEAALRFRGS RAKLNFPEDA RLTAPSSAAA AAAAAPPASA AAASAAGAYP DASAVSEYLQ  120
YQMLMQGAGG HGGGFPHQYY GGAGAVSSSS GSYSFPASSV TVASVPPSSA PGYGEAAQWT  180
AGTSWPDSAW SYPATTGSWS GSGNYPPSTR PPQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-242177663ATERF1
3gcc_A8e-242177663ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG435100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809416.11e-86ethylene-responsive transcription factor ABR1-like
TrEMBLA0A2T7EDC73e-84A0A2T7EDC7_9POAL; Uncharacterized protein
STRINGPavir.J02402.1.p1e-143(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62322649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.14e-27ethylene response factor 110