PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG437100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 251aa    MW: 27591.8 Da    PI: 5.4987
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG437100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM134.76.3e-4251361127
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                          lppGfrF Pt+eel+++yL++k++g +  ++e+vi+ +d++ ++Pw+Lp+    ++++  + w++F++r++++a+g r+nr+t sgyWka
  Pavir.9NG437100.1.p   5 LPPGFRFYPTEEELLCFYLRNKLDGVRqGDIERVIPVADVCALDPWQLPEahrgAFSGAAEPWFYFCPRQEREARGGRPNRTTPSGYWKA 94 
                          79**********************9885677788**************95455555557789**************************** PP

                  NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                           g+   v++++g+ +g+kkt+vfy+grap g kt+W ++ey+
  Pavir.9NG437100.1.p  95 AGTPGLVYAADGRSIGTKKTMVFYRGRAPAGAKTKWKLNEYK 136
                          *****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.76E-464169IPR003441NAC domain
PROSITE profilePS5100546.9635169IPR003441NAC domain
PfamPF023651.1E-226136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MADELPPGFR FYPTEEELLC FYLRNKLDGV RQGDIERVIP VADVCALDPW QLPEAHRGAF  60
SGAAEPWFYF CPRQEREARG GRPNRTTPSG YWKAAGTPGL VYAADGRSIG TKKTMVFYRG  120
RAPAGAKTKW KLNEYKALEV EDEDAAGVPA PSHAFQTRGE FTLCRLYTES GCPRQFDRRP  180
SAAAAAGGGS ENRIAAAALA NGEEMGRKRK RAAPSDGDGS TQQLLGQRGT DEGLNDDMAY  240
WSEILEYDWL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-33517517171NO APICAL MERISTEM PROTEIN
1ut4_B4e-33517517171NO APICAL MERISTEM PROTEIN
1ut7_A4e-33517517171NO APICAL MERISTEM PROTEIN
1ut7_B4e-33517517171NO APICAL MERISTEM PROTEIN
4dul_A4e-33517517171NAC domain-containing protein 19
4dul_B4e-33517517171NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205211GRKRKRA
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG437100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0936261e-137FP093626.1 Phyllostachys edulis cDNA clone: bphylf060a06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809342.11e-158NAC domain-containing protein 90-like
TrEMBLA0A2S3HBL81e-157A0A2S3HBL8_9POAL; Uncharacterized protein
STRINGPavir.J04751.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.11e-69NAC domain containing protein 90