PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG442700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 149aa    MW: 16151.6 Da    PI: 11.6244
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG442700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY32.12.3e-10114135122
                          ---SS-EEEEEEE--TT-SS-E CS
                 WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                          ++Dg+ WrKYGqK+++gs++pr
  Pavir.9NG442700.1.p 114 MEDGFVWRKYGQKDIHGSKHPR 135
                          58*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-8107135IPR003657WRKY domain
PROSITE profilePS508119.603109135IPR003657WRKY domain
SuperFamilySSF1182905.75E-8111136IPR003657WRKY domain
SMARTSM007740.0043114148IPR003657WRKY domain
PfamPF031061.1E-6115135IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MAAPATAASE LVARGRKSAA SLRGMLGPQP AVRAGATPHG LQLQDLVEQI LNCCDRALAA  60
LRAATEDAAA ASSARKRRKP EQGAVPIPAT ISNSKRMRLR GGERATRAEK RRTMEDGFVW  120
RKYGQKDIHG SKHPRWRPVL NSDYKIMI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG442700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809543.15e-52probable WRKY transcription factor 38
TrEMBLA0A3L6R9N82e-56A0A3L6R9N8_PANMI; WRKY transcription factor
STRINGPavir.J00720.1.p1e-103(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46632667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.12e-07WRKY DNA-binding protein 30