PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG456100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 337aa    MW: 36660.3 Da    PI: 7.074
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG456100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.83.7e-5261331128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lppGfrFhPtd+elv +yLk+kv++ k+el evi+ +d+yk+ePw+Lp k  + +++ ew+fF++rd+ky++g+r+nrat++gyWkatgk
  Pavir.9NG456100.1.p   6 LPPGFRFHPTDDELVGYYLKRKVDNLKIEL-EVIPVIDLYKSEPWELPeKsFLPKRDLEWFFFCPRDRKYPNGSRTNRATATGYWKATGK 94 
                          79****************************.99**************95334445667******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d+++ + +  + gl+ktLvfy+grap ge+tdWvmheyrl
  Pavir.9NG456100.1.p  95 DRRIAC-DAGVYGLRKTLVFYRGRAPGGERTDWVMHEYRL 133
                          ******.8899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-603155IPR003441NAC domain
PROSITE profilePS5100556.5786156IPR003441NAC domain
PfamPF023654.4E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008283Biological Processcell proliferation
GO:0071365Biological Processcellular response to auxin stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGTMTLPPGF RFHPTDDELV GYYLKRKVDN LKIELEVIPV IDLYKSEPWE LPEKSFLPKR  60
DLEWFFFCPR DRKYPNGSRT NRATATGYWK ATGKDRRIAC DAGVYGLRKT LVFYRGRAPG  120
GERTDWVMHE YRLCQDLAHG ACNFIGAYAL CRVIKRHEAG LLQGEPAARA KGASNAAGGR  180
AQMSKVSSTS SLVSSEQLSA FTPTNSSPPP TLDMSRGMCA TAESGSTFQS PLAYGGDATA  240
TATTGLPSSP LPPPLFVPSG RSSPPHDTFF IGGDDMGIGA AEHELRWDSF AYPSTFSNGA  300
EMWNATASPL LCRQASDGGV DDLAALFFSE DNRIVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-51115912168NO APICAL MERISTEM PROTEIN
1ut4_B8e-51115912168NO APICAL MERISTEM PROTEIN
1ut7_A8e-51115912168NO APICAL MERISTEM PROTEIN
1ut7_B8e-51115912168NO APICAL MERISTEM PROTEIN
3swm_A1e-50116015172NAC domain-containing protein 19
3swm_B1e-50116015172NAC domain-containing protein 19
3swm_C1e-50116015172NAC domain-containing protein 19
3swm_D1e-50116015172NAC domain-containing protein 19
3swp_A1e-50116015172NAC domain-containing protein 19
3swp_B1e-50116015172NAC domain-containing protein 19
3swp_C1e-50116015172NAC domain-containing protein 19
3swp_D1e-50116015172NAC domain-containing protein 19
4dul_A8e-51115912168NAC domain-containing protein 19
4dul_B8e-51115912168NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00439DAPTransfer from AT4G17980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG456100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF7954881e-135JF795488.1 Zea mays NAC transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792378.10.0NAC domain-containing protein 71-like
TrEMBLA0A2T7C9T30.0A0A2T7C9T3_9POAL; Uncharacterized protein
STRINGPavir.Ia03491.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62093854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.19e-83NAC domain containing protein 71