PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG475300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 785aa    MW: 92187.2 Da    PI: 8.937
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG475300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR173.83.6e-2375181291
                 FAR1   2 fYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk...............tekerrtraetrtgCkaklkvkkekd 73 
                          f+++Y+  +GF+v++++  ++   k+n+ei+k++++C ++gk+++++++               ++ +r+t+++ rt+Ck+ ++vk+   
  Pavir.9NG475300.1.p  75 FFSFYGFLAGFEVVVAHVARTsakKKNNEIYKQEMKCHRYGKQSKKEEQieladetllreasndDKAKRKTNVQVRTDCKCVMVVKEI-A 163
                          9**************9998887889999******************999**************99999********************.* PP

                 FAR1  74 gkwevtkleleHnHelap 91 
                          g w+v++l+leHnHel+p
  Pavir.9NG475300.1.p 164 GIWKVIRLDLEHNHELSP 181
                          ****************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.6E-2275181IPR004330FAR1 DNA binding domain
PfamPF105511.9E-37301394IPR018289MULE transposase domain
PROSITE profilePS509669.718586624IPR007527Zinc finger, SWIM-type
SMARTSM005752.1E-6599626IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 785 aa     Download sequence    Send to blast
MKTLGSNAGK EFNGSDENKN EAELNGSQEL TEEEVEEFIR KEQQAASEGN NADIDSKYTP  60
QIGMEFKDRD AAHHFFSFYG FLAGFEVVVA HVARTSAKKK NNEIYKQEMK CHRYGKQSKK  120
EEQIELADET LLREASNDDK AKRKTNVQVR TDCKCVMVVK EIAGIWKVIR LDLEHNHELS  180
PKDRNQLFSG RKYMTDMEKG IIGTLNDYNI PTRKMIAILS YLREGLIALP YKTKDVQNMR  240
TKINREVTGN DMTQAMEYFR KRKMQDSTFY FRFQVDNDMK VKNIFWREGI SLKWYAEYGD  300
CISFDTTYMT NRYNLPFAPF VGITGHAHTC LLGCAFLSDE TTETFKWIFE TFLESMGGKH  360
PKSIITDQDK AMRSAIEKVF PNSKHRNCFF HIKSKCYNKN LRCFAVNKGL PEKFEDIVNF  420
SVTEDEFEML WQGMIAEYKL EKNKYFNKMW ETRKRFIPVY FKNDFFPFIQ STGRSEGTNA  480
RFKDNVGPTY SIVSFLREYQ RIVDTIKNKE EIEDNFNKQK MPKEIQYGYT IEQQAVELYN  540
RNIYIKFSNQ LRQTEMYKYK ETEKGRCFEV WYKANQLKKR ERIRKYIVLT DLTEGCEEFS  600
CICGKFNKDG ILCAHILKVI VEEEINKIPE KYFIDRWRKK EKKFHIQEDI DGNATHELLR  660
FNMLSRKAAL LTSKGAKTKE GMQYLDEEFE RLNKHLDFLL EEKERQTTLV ITEQSEIHHD  720
DGGSISNNVG EIVILQDPKR IQQKGRPKNP TRLKPLVEQE RAKMAKAATK ENKKQQQTSS  780
KPHV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG475300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311831.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1Z5S6T50.0A0A1Z5S6T5_SORBI; Uncharacterized protein
STRINGPavir.Ia02283.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-84FAR1-related sequence 5