PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG483000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 370aa    MW: 38174.3 Da    PI: 7.7291
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG483000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.86.1e-18267302136
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkglk 36 
                          C++C + kTp+WR gp g+ktLCnaCG+++++ +l+
  Pavir.9NG483000.1.p 267 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLM 302
                          ********************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.3E-16261311IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.227265297IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.4E-13265299IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577167.6E-14265325No hitNo description
CDDcd002021.94E-13266313No hitNo description
PROSITE patternPS003440267292IPR000679Zinc finger, GATA-type
PfamPF003201.3E-15267302IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MASEWEMAMG VELGMGMGTY HAHHHNASSI TAAPMSSHHS GAATFAAPHH HHYYGMPPMG  60
DAMRVDELLD LSTGAGAGAH DFFPTAAAAA ATDNGHHSAV MGEPSPTANS SDHQTSLLSF  120
ADEFYIPSEE AAELEWLSKF VDDSYSDMPN YSSAAHAAMA AAAAANAAGN GGGNSAGQDS  180
CVTAAPGRGA RSKRSRATAL AAAAWHSLVP RPASQSSPSS SSCSSSDFPS SNKPARPNGA  240
SGSRGKKSPG PGGAAPEVGM EGGVRRCTHC ASEKTPQWRT GPLGPKTLCN ACGVRFKSGR  300
LMPEYRPAAS PTFVLTHHSN SHRKVMELRR QKELILIRGS HRDAAAAAAA AAGSAGPRPE  360
LMFRDYGVC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.170530.0root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots. Also expressed in flowers and leaves, and to a lower extent in stems. {ECO:0000269|PubMed:12139008}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG483000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0688040.0BT068804.1 Zea mays full-length cDNA clone ZM_BFb0383N16 mRNA, complete cds.
GenBankBT0877980.0BT087798.1 Zea mays full-length cDNA clone ZM_BFb0206G21 mRNA, complete cds.
GenBankEU9562060.0EU956206.1 Zea mays clone 1559028 GATA transcription factor 9 mRNA, complete cds.
GenBankKJ7269570.0KJ726957.1 Zea mays clone pUT3655 C2C2-GATA transcription factor (GATA28) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795835.10.0GATA transcription factor 2-like
SwissprotO497413e-57GATA2_ARATH; GATA transcription factor 2
TrEMBLA0A3L6TQM80.0A0A3L6TQM8_PANMI; GATA transcription factor
STRINGPavir.Ia02808.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46212955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.12e-45GATA transcription factor 2
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]