PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG485500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 84aa    MW: 9530.15 Da    PI: 12.1253
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG485500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like67.52.3e-212765240
              G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkg 40
                         prlrWtp+LH+rFv+a+++LGG++kAtPk++l+lm+v +
  Pavir.9NG485500.1.p 27 PRLRWTPDLHRRFVHAIHRLGGQHKATPKRVLQLMGVRD 65
                         8***********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-182364IPR009057Homeodomain-like
SuperFamilySSF466895.55E-82565IPR009057Homeodomain-like
TIGRFAMsTIGR015576.9E-152765IPR006447Myb domain, plants
PfamPF002492.2E-62868IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MMTVERAMAG RERVEGAARQ YNRSKVPRLR WTPDLHRRFV HAIHRLGGQH KATPKRVLQL  60
MGVRDCGASP YPMSRAIFRC TGT*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG485500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022685487.16e-36putative Myb family transcription factor At1g14600
SwissprotQ700D91e-16MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLK4AK117e-32K4AK11_SETIT; Uncharacterized protein
STRINGPavir.Ia02879.1.p2e-55(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76102950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.14e-19G2-like family protein