PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG508900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 629aa    MW: 67160.8 Da    PI: 6.3639
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG508900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3168e-972206272374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPi 90 
                           +lLlecA+av+++d +++q+l++ l+elasp+gd  q+la+yf+++L arl+ s++++ ++l++ ++++++  e++  + l f+e+sP+
  Pavir.9NG508900.1.p 220 AQLLLECARAVAARDSQRVQQLMWMLNELASPYGDVDQKLASYFLQGLFARLTTSGPHTLRTLAAASDRSTS-FESTRRTALkFQELSPW 308
                          589************************************************************998888544.3333333335******* PP

                 GRAS  91 lkfshltaNqaIleavege............ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg...skeeleetger 164
                            f+h++aN aIlea+ ++             r+Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l iT+v+++++     ++ ++e+++r
  Pavir.9NG508900.1.p 309 TSFGHVAANGAILEAFLEAaaasssssssqpPRLHILDLSNTFCTQWPTLLEALATRSsDDTPHLSITTVVPSAAPsaaAQRVMREIAQR 398
                          ***************9776666677777777789************************8889********996655788999******** PP

                 GRAS 165 LakfAeelgvpfefnvlvak.rledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250
                          L+kfA+ +gvpf+f+++++  +l++l+l+ L++++     ala+n+v +l  +   ++  +  rd+++  +++l+P+vv+vve++ad+ +
  Pavir.9NG508900.1.p 399 LEKFARLMGVPFSFRAVHHAgDLAELDLDGLDLREggaTTALAINCVNALRGVA--PGGARR-RDAFVASLRRLEPRVVTVVEEDADLVA 485
                          ****************97767**************888889************8..555555.9*********************99944 PP

                 GRAS 251 e..............sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkp 326
                          +               F++ f+e l+++sa +dsle+++p++s+er  +Er+  gr+iv++v+c  +e+ er+et ++W +r+++aGF+p
  Pavir.9NG508900.1.p 486 AsdsdasseesstdaAFMKVFTEGLRFFSAYMDSLEESFPKTSNERLALERA-AGRAIVDLVSCPASESAERRETGASWARRMRSAGFSP 574
                          447899999****99*************************************.************************************* PP

                 GRAS 327 vplsekaakqaklllrkvksdgyrveee......sgslvlgWkdrpLvsvSaWr 374
                          v++s+++a+++++llr++  +g++++e        + ++l Wk++p+v++SaWr
  Pavir.9NG508900.1.p 575 VAFSDDVADDIRSLLRRYR-EGWTLQEPgtddsaAAGVLLAWKEQPVVWTSAWR 627
                          ******************9.99****6666566567777**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.177193602IPR005202Transcription factor GRAS
PfamPF035142.8E-94220627IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MDTLFRLVSL HQHHHHHPQA PSSPDQHQHH HQSPYSSRST SRSTTSTGSR SSPGSHRTHN  60
HHYYPHSHYN TTTSSSSYYY YDPAAGAGGG GGGYYYDHQP PAPYQEECGN DHGFYMDEDF  120
SSSSSSRHFH HQPSSAAPPA PAHPPPASSP APTPPQPPPA SSSAGGGHGA LFEAADFSFP  180
QVDIDLDFGS PASSSGAAGG SGAAAASASA GGGAAGRWAA QLLLECARAV AARDSQRVQQ  240
LMWMLNELAS PYGDVDQKLA SYFLQGLFAR LTTSGPHTLR TLAAASDRST SFESTRRTAL  300
KFQELSPWTS FGHVAANGAI LEAFLEAAAA SSSSSSSQPP RLHILDLSNT FCTQWPTLLE  360
ALATRSSDDT PHLSITTVVP SAAPSAAAQR VMREIAQRLE KFARLMGVPF SFRAVHHAGD  420
LAELDLDGLD LREGGATTAL AINCVNALRG VAPGGARRRD AFVASLRRLE PRVVTVVEED  480
ADLVAASDSD ASSEESSTDA AFMKVFTEGL RFFSAYMDSL EESFPKTSNE RLALERAAGR  540
AIVDLVSCPA SESAERRETG ASWARRMRSA GFSPVAFSDD VADDIRSLLR RYREGWTLQE  600
PGTDDSAAAG VLLAWKEQPV VWTSAWRP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-15821462882474Protein SHORT-ROOT
5b3h_B1e-15921462828420Protein SHORT-ROOT
5b3h_E1e-15921462828420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG508900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7270150.0KJ727015.1 Zea mays clone pUT3996 GRAS transcription factor (GRAS58) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796633.10.0protein SHORT-ROOT 2-like
SwissprotA2YN560.0SHR1_ORYSI; Protein SHORT-ROOT 1
TrEMBLA0A3L6TJ520.0A0A3L6TJ52_PANMI; Protein SHORT-ROOT 2-like
STRINGPavir.Ia02979.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35263781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-122GRAS family protein