PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG514100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 212aa    MW: 25195.9 Da    PI: 10.042
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG514100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR140.68.3e-131294289
                 FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89
                         f+ +Y+ + GF+vrk++++k+k  g+i + + vC ke kr++ +k       +r+etrt+ + ++ v +++  gk+++++l+l HnH l
  Pavir.9NG514100.1.p 12 FWIRYGGQEGFEVRKRYTNKRKFYGKIRSWKCVCAKENKRDRLTKC------KRVETRTNYQIRMGVVLDQeMGKYNMADLVLGHNHIL 94
                         999**********************************999987666......99*************999989**************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-81294IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MEFNTIEEAW MFWIRYGGQE GFEVRKRYTN KRKFYGKIRS WKCVCAKENK RDRLTKCKRV  60
ETRTNYQIRM GVVLDQEMGK YNMADLVLGH NHILRLPKIS HLMVSQRKFS DYTLRDHKNY  120
YYLRGKHQRE MAYGQAGSML VYFQNKITAN PSFQYALQID PEEQIANIFW VDAKMITDYA  180
YFGDVASFNT IFGTNKESRT FGVFIGFNQL R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG514100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876512.11e-108protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_025876513.11e-108protein FAR1-RELATED SEQUENCE 5-like isoform X2
RefseqXP_025877975.11e-107protein FAR1-RELATED SEQUENCE 5-like
TrEMBLB8ALN61e-108B8ALN6_ORYSI; Uncharacterized protein
STRINGOS10T0571900-001e-108(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-20FAR1-related sequence 5